LigandReceptorYankProtocol
==========================

.. currentmodule:: propertyestimator.protocols.yank

.. autoclass:: LigandReceptorYankProtocol

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~LigandReceptorYankProtocol.__init__
      ~LigandReceptorYankProtocol.apply_replicator
      ~LigandReceptorYankProtocol.can_merge
      ~LigandReceptorYankProtocol.execute
      ~LigandReceptorYankProtocol.get_class_attribute
      ~LigandReceptorYankProtocol.get_value
      ~LigandReceptorYankProtocol.get_value_references
      ~LigandReceptorYankProtocol.merge
      ~LigandReceptorYankProtocol.replace_protocol
      ~LigandReceptorYankProtocol.set_uuid
      ~LigandReceptorYankProtocol.set_value
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~LigandReceptorYankProtocol.allow_merging
      ~LigandReceptorYankProtocol.apply_restraints
      ~LigandReceptorYankProtocol.checkpoint_interval
      ~LigandReceptorYankProtocol.dependencies
      ~LigandReceptorYankProtocol.estimated_free_energy
      ~LigandReceptorYankProtocol.force_field_path
      ~LigandReceptorYankProtocol.id
      ~LigandReceptorYankProtocol.ligand_residue_name
      ~LigandReceptorYankProtocol.number_of_equilibration_iterations
      ~LigandReceptorYankProtocol.number_of_iterations
      ~LigandReceptorYankProtocol.receptor_residue_name
      ~LigandReceptorYankProtocol.restraint_type
      ~LigandReceptorYankProtocol.schema
      ~LigandReceptorYankProtocol.setup_only
      ~LigandReceptorYankProtocol.solvated_complex_coordinates
      ~LigandReceptorYankProtocol.solvated_complex_system
      ~LigandReceptorYankProtocol.solvated_complex_trajectory_path
      ~LigandReceptorYankProtocol.solvated_ligand_coordinates
      ~LigandReceptorYankProtocol.solvated_ligand_system
      ~LigandReceptorYankProtocol.solvated_ligand_trajectory_path
      ~LigandReceptorYankProtocol.steps_per_iteration
      ~LigandReceptorYankProtocol.thermodynamic_state
      ~LigandReceptorYankProtocol.timestep
      ~LigandReceptorYankProtocol.verbose
   
   