../perses/__init__.py
../perses/storage/__init__.py
../perses/storage/movie.py
../perses/storage/storage.py
../perses/analysis/__init__.py
../perses/analysis/analysis.py
../perses/samplers/__init__.py
../perses/samplers/samplers.py
../perses/samplers/thermodynamics.py
../perses/rjmc/__init__.py
../perses/rjmc/coordinate_numba.py
../perses/rjmc/coordinate_tools.py
../perses/rjmc/geometry.py
../perses/rjmc/topology_proposal.py
../perses/annihilation/__init__.py
../perses/annihilation/ncmc_switching.py
../perses/annihilation/new_relative.py
../perses/annihilation/relative.py
../perses/bias/__init__.py
../perses/bias/bias_engine.py
../perses/tests/__init__.py
../perses/tests/benchmark.py
../perses/tests/test_analysis.py
../perses/tests/test_elimination.py
../perses/tests/test_geometry_engine.py
../perses/tests/test_hybrid_builder.py
../perses/tests/test_ncmc_integrator.py
../perses/tests/test_relative_setup.py
../perses/tests/test_samplers.py
../perses/tests/test_storage.py
../perses/tests/test_topology_proposal.py
../perses/tests/testsystems.py
../perses/tests/utils.py
../perses/dispersed/__init__.py
../perses/dispersed/feptasks.py
../perses/dispersed/relative_setup.py
../examples/README.md
../examples/relative_hydration.py
../examples/abl-src-selectivity/selectivity.py
../examples/cdk2-example/CDK2_fixed_nohet.pdb
../examples/cdk2-example/CDK2_ligands.mol2
../examples/cdk2-example/cdk2_setup.yaml
../examples/cdk2-example/README.md
../examples/dualtopology/3_aminos.py
../examples/dualtopology/all_aminos.py
../examples/dualtopology/amino_acid_example.py
../examples/host-guest/complex.pdb
../examples/host-guest/guests.mol2
../examples/host-guest/hg_setup.yaml
../examples/host-guest/host.mol2
../examples/host-guest/prepare_host_guest.py
../examples/host-guest/README.md
../examples/rjmc/README.md
../examples/rjmc/run_example.py
../perses/data/181L.pdb
../perses/data/1sb0.pdb
../perses/data/amber99sbildn-valence-only.xml
../perses/data/clinical-kinase-inhibitors.csv
../perses/data/gaff-valence-only.xml
../perses/data/gaff.xml
../perses/data/kinase-inhibitors.xml
../perses/data/L99A-binders.txt
../perses/data/L99A-non-binders.txt
../perses/data/T4-inhibitors.xml
../perses/data/abl-imatinib/complex.pdb
../perses/data/abl-imatinib/inhibitor.pdb
../perses/data/abl-imatinib/README.md
../perses/data/abl-imatinib/receptor.pdb
../perses/data/abl-src/abl-imatinib.pdb
../perses/data/abl-src/src-imatinib.pdb
../perses/data/cdk2-example/CDK2_fixed_nohet.pdb
../perses/data/cdk2-example/CDK2_ligands.mol2
../perses/data/cdk2-example/cdk2_setup.yaml
../perses/data/cdk2-example/README.md
../perses/data/constant-pH/abl-imatinib/complex.pdb
../perses/data/constant-pH/abl-imatinib/generate-ligand-ffxml.py
../perses/data/constant-pH/abl-imatinib/Imatinib-epik-charged.ffxml
../perses/data/constant-pH/abl-imatinib/Imatinib-epik-charged.mol2
../perses/data/constant-pH/abl-imatinib/Imatinib-state-penalties.out
../perses/data/constant-pH/abl-imatinib/inhibitor.pdb
../perses/data/constant-pH/abl-imatinib/README.md
../perses/data/constant-pH/abl-imatinib/receptor.pdb
../perses/data/constant-pH/imidazole/convert.py
../perses/data/constant-pH/imidazole/generate-protomers-from-smiles.py
../perses/data/constant-pH/imidazole/imidazole.pdb
../perses/data/constant-pH/imidazole/README.md
../perses/data/constant-pH/imidazole/imidazole/imidazole-epik-charged.mol2
../perses/data/constant-pH/imidazole/imidazole/imidazole-epik-charged.pdb
../perses/data/constant-pH/imidazole/imidazole/imidazole-epik.log
../perses/data/constant-pH/imidazole/imidazole/imidazole-epik.mae
../perses/data/constant-pH/imidazole/imidazole/imidazole-epik.mol2
../perses/data/constant-pH/imidazole/imidazole/imidazole-epik.sdf
../perses/data/constant-pH/imidazole/imidazole/imidazole-input.mol2
../perses/data/constant-pH/imidazole/imidazole/imidazole-state-penalties.out
../perses/data/schrodinger-jacs-datasets/Bace_ligands.sdf
../perses/data/schrodinger-jacs-datasets/CDK2_ligands.sdf
../perses/data/schrodinger-jacs-datasets/Jnk1_ligands.sdf
../perses/data/schrodinger-jacs-datasets/MCL1_ligands.sdf
../perses/data/schrodinger-jacs-datasets/p38_ligands.sdf
../perses/data/schrodinger-jacs-datasets/PTP1B_ligands.sdf
../perses/data/schrodinger-jacs-datasets/README.md
../perses/data/schrodinger-jacs-datasets/Thrombin_ligands.sdf
../perses/data/schrodinger-jacs-datasets/Tyk2_ligands.sdf
../perses/__pycache__/__init__.cpython-35.pyc
../perses/storage/__pycache__/__init__.cpython-35.pyc
../perses/storage/__pycache__/movie.cpython-35.pyc
../perses/storage/__pycache__/storage.cpython-35.pyc
../perses/analysis/__pycache__/__init__.cpython-35.pyc
../perses/analysis/__pycache__/analysis.cpython-35.pyc
../perses/samplers/__pycache__/__init__.cpython-35.pyc
../perses/samplers/__pycache__/samplers.cpython-35.pyc
../perses/samplers/__pycache__/thermodynamics.cpython-35.pyc
../perses/rjmc/__pycache__/__init__.cpython-35.pyc
../perses/rjmc/__pycache__/coordinate_numba.cpython-35.pyc
../perses/rjmc/__pycache__/coordinate_tools.cpython-35.pyc
../perses/rjmc/__pycache__/geometry.cpython-35.pyc
../perses/rjmc/__pycache__/topology_proposal.cpython-35.pyc
../perses/annihilation/__pycache__/__init__.cpython-35.pyc
../perses/annihilation/__pycache__/ncmc_switching.cpython-35.pyc
../perses/annihilation/__pycache__/new_relative.cpython-35.pyc
../perses/annihilation/__pycache__/relative.cpython-35.pyc
../perses/bias/__pycache__/__init__.cpython-35.pyc
../perses/bias/__pycache__/bias_engine.cpython-35.pyc
../perses/tests/__pycache__/__init__.cpython-35.pyc
../perses/tests/__pycache__/benchmark.cpython-35.pyc
../perses/tests/__pycache__/test_analysis.cpython-35.pyc
../perses/tests/__pycache__/test_elimination.cpython-35.pyc
../perses/tests/__pycache__/test_geometry_engine.cpython-35.pyc
../perses/tests/__pycache__/test_hybrid_builder.cpython-35.pyc
../perses/tests/__pycache__/test_ncmc_integrator.cpython-35.pyc
../perses/tests/__pycache__/test_relative_setup.cpython-35.pyc
../perses/tests/__pycache__/test_samplers.cpython-35.pyc
../perses/tests/__pycache__/test_storage.cpython-35.pyc
../perses/tests/__pycache__/test_topology_proposal.cpython-35.pyc
../perses/tests/__pycache__/testsystems.cpython-35.pyc
../perses/tests/__pycache__/utils.cpython-35.pyc
../perses/dispersed/__pycache__/__init__.cpython-35.pyc
../perses/dispersed/__pycache__/feptasks.cpython-35.pyc
../perses/dispersed/__pycache__/relative_setup.cpython-35.pyc
../examples/__pycache__/relative_hydration.cpython-35.pyc
../examples/abl-src-selectivity/__pycache__/selectivity.cpython-35.pyc
../examples/dualtopology/__pycache__/3_aminos.cpython-35.pyc
../examples/dualtopology/__pycache__/all_aminos.cpython-35.pyc
../examples/dualtopology/__pycache__/amino_acid_example.cpython-35.pyc
../examples/host-guest/__pycache__/prepare_host_guest.cpython-35.pyc
../examples/rjmc/__pycache__/run_example.cpython-35.pyc
../perses/data/constant-pH/abl-imatinib/__pycache__/generate-ligand-ffxml.cpython-35.pyc
../perses/data/constant-pH/imidazole/__pycache__/convert.cpython-35.pyc
../perses/data/constant-pH/imidazole/__pycache__/generate-protomers-from-smiles.cpython-35.pyc
dependency_links.txt
entry_points.txt
not-zip-safe
PKG-INFO
requires.txt
SOURCES.txt
top_level.txt
