All Classes Namespaces Functions Variables Pages
Here is a list of all class members with links to the classes they belong to:

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- acceptor_list : CharmmPsfFile
- add() : Modeller
- addAcceptor() : CustomHbondForce
- addAngle() : AmoebaAngleForce , AmoebaInPlaneAngleForce , CustomAngleForce , HarmonicAngleForce
- addAtom() : Topology
- addBond() : Topology , AmoebaBondForce , CustomBondForce , CustomCompoundBondForce , GBVIForce , HarmonicBondForce
- addChain() : Topology
- addComputedValue() : CustomGBForce
- addComputeGlobal() : CustomIntegrator
- addComputePerDof() : CustomIntegrator
- addComputeSum() : CustomIntegrator
- addConstrainPositions() : CustomIntegrator
- addConstraint() : System
- addConstrainVelocities() : CustomIntegrator
- addDonor() : CustomHbondForce
- addEnergyTerm() : CustomGBForce
- addException() : NonbondedForce
- addException_usingRMin() : NonbondedForce
- addExclusion() : CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce
- addExtraParticles() : Modeller
- addForce() : System
- addFunction() : CustomCompoundBondForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce
- addGlobalParameter() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce , CustomTorsionForce
- addGlobalVariable() : CustomIntegrator
- addHydrogens() : Modeller
- addInteractionGroup() : CustomNonbondedForce
- addMap() : CMAPTorsionForce
- addMultipole() : AmoebaMultipoleForce
- addOutOfPlaneBend() : AmoebaOutOfPlaneBendForce
- addParticle() : AmoebaGeneralizedKirkwoodForce , AmoebaVdwForce , AmoebaWcaDispersionForce , CustomExternalForce , CustomGBForce , CustomManyParticleForce , CustomNonbondedForce , DrudeForce , GBSAOBCForce , GBVIForce , NonbondedForce , System
- addParticle_usingRVdw() : NonbondedForce
- addPerAcceptorParameter() : CustomHbondForce
- addPerAngleParameter() : CustomAngleForce
- addPerBondParameter() : CustomBondForce , CustomCompoundBondForce
- addPerDofVariable() : CustomIntegrator
- addPerDonorParameter() : CustomHbondForce
- addPerParticleParameter() : CustomExternalForce , CustomGBForce , CustomManyParticleForce , CustomNonbondedForce
- addPerTorsionParameter() : CustomTorsionForce
- addPiTorsion() : AmoebaPiTorsionForce
- addResidue() : Topology
- addScreenedPair() : DrudeForce
- addSolvent() : Modeller
- addStretchBend() : AmoebaStretchBendForce
- addTabulatedFunction() : CustomCompoundBondForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce
- addTorsion() : CMAPTorsionForce , CustomTorsionForce , PeriodicTorsionForce , RBTorsionForce
- addTorsionTorsion() : AmoebaTorsionTorsionForce
- addUpdateContextState() : CustomIntegrator
- ANGLE_FORCE_GROUP : CharmmPsfFile
- angle_list : CharmmPsfFile
- angle_types : CharmmParameterSet
- applyConstraints() : Context
- applyVelocityConstraints() : Context
- atom_list : CharmmPsfFile
- atom_types_int : CharmmParameterSet
- atom_types_str : CharmmParameterSet
- atom_types_tuple : CharmmParameterSet
- atomic_number() : Element
- atomNames : GromacsGroFile
- atomno : CharmmCrdFile
- atoms() : Chain , Residue , Topology
- attype : CharmmCrdFile