All Classes Namespaces Functions Variables Pages
Here is a list of all class members with links to the classes they belong to:

### - g -

- GB_FORCE_GROUP : CharmmPsfFile
- getAcceptorParameters() : CustomHbondForce
- getAEwald() : AmoebaMultipoleForce
- getAlpha() : AMDIntegrator
- getAlphaGroup() : AMDForceGroupIntegrator , DualAMDIntegrator
- getAlphaTotal() : DualAMDIntegrator
- getAmoebaGlobalAngleCubic() : AmoebaAngleForce
- getAmoebaGlobalAnglePentic() : AmoebaAngleForce
- getAmoebaGlobalAngleQuartic() : AmoebaAngleForce
- getAmoebaGlobalAngleSextic() : AmoebaAngleForce
- getAmoebaGlobalBondCubic() : AmoebaBondForce
- getAmoebaGlobalBondQuartic() : AmoebaBondForce
- getAmoebaGlobalInPlaneAngleCubic() : AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAnglePentic() : AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAngleQuartic() : AmoebaInPlaneAngleForce
- getAmoebaGlobalInPlaneAngleSextic() : AmoebaInPlaneAngleForce
- getAmoebaGlobalOutOfPlaneBendCubic() : AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendPentic() : AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendQuartic() : AmoebaOutOfPlaneBendForce
- getAmoebaGlobalOutOfPlaneBendSextic() : AmoebaOutOfPlaneBendForce
- getAngleParameters() : AmoebaAngleForce , AmoebaInPlaneAngleForce , CustomAngleForce , HarmonicAngleForce
- getApplyThermostat() : RPMDIntegrator
- getAwater() : AmoebaWcaDispersionForce
- getBondParameters() : AmoebaBondForce , CustomBondForce , CustomCompoundBondForce , GBVIForce , HarmonicBondForce
- getBornRadiusScalingMethod() : GBVIForce
- getBoxVectors() : AmberInpcrdFile
- getByAtomicNumber() : Element
- getByMass() : Element
- getBySymbol() : Element
- getComputationStep() : CustomIntegrator
- getComputedValueParameters() : CustomGBForce
- getConstraintParameters() : System
- getConstraintTolerance() : Integrator
- getContractions() : RPMDIntegrator
- getCovalentMap() : AmoebaMultipoleForce
- getCovalentMaps() : AmoebaMultipoleForce
- getCutoff() : AmoebaVdwForce
- getCutoffDistance() : AmoebaMultipoleForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce , GBSAOBCForce , GBVIForce , NonbondedForce
- getDefaultCollisionFrequency() : AndersenThermostat
- getDefaultPeriodicBoxVectors() : System
- getDefaultPluginsDirectory : Platform
- getDefaultPressure() : MonteCarloAnisotropicBarostat , MonteCarloBarostat , MonteCarloMembraneBarostat , RPMDMonteCarloBarostat
- getDefaultSurfaceTension() : MonteCarloMembraneBarostat
- getDefaultTemperature() : AndersenThermostat
- getDispoff() : AmoebaWcaDispersionForce
- getDonorParameters() : CustomHbondForce
- getDrudeFriction() : DrudeLangevinIntegrator
- getDrudeTemperature() : DrudeLangevinIntegrator
- getE() : AMDIntegrator
- getEffectiveEnergy() : AMDForceGroupIntegrator , AMDIntegrator , DualAMDIntegrator
- getEGroup() : AMDForceGroupIntegrator , DualAMDIntegrator
- getElectrostaticPotential() : AmoebaMultipoleForce
- getEnergyFunction() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce , CustomTorsionForce
- getEnergyTermParameters() : CustomGBForce
- getEpsh() : AmoebaWcaDispersionForce
- getEpsilonCombiningRule() : AmoebaVdwForce
- getEpso() : AmoebaWcaDispersionForce
- getErrorTolerance() : VariableLangevinIntegrator , VariableVerletIntegrator
- getETotal() : DualAMDIntegrator
- getEwaldErrorTolerance() : AmoebaMultipoleForce , NonbondedForce
- getExceptionParameters() : NonbondedForce
- getExclusionParticles() : CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce
- getForce() : System
- getForceGroup() : Force
- getForces() : State , System
- getFrequency() : CMMotionRemover , MonteCarloAnisotropicBarostat , MonteCarloBarostat , MonteCarloMembraneBarostat , RPMDMonteCarloBarostat
- getFriction() : BrownianIntegrator , DrudeLangevinIntegrator , LangevinIntegrator , RPMDIntegrator , VariableLangevinIntegrator
- getFunctionParameters() : Continuous1DFunction , Continuous2DFunction , Continuous3DFunction , CustomCompoundBondForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce , Discrete1DFunction , Discrete2DFunction , Discrete3DFunction
- getGenerators() : ForceField
- getGlobalParameterDefaultValue() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce , CustomTorsionForce
- getGlobalParameterName() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce , CustomTorsionForce
- getGlobalVariable() : CustomIntegrator
- getGlobalVariableByName() : CustomIntegrator
- getGlobalVariableName() : CustomIntegrator
- getIncludeCavityTerm() : AmoebaGeneralizedKirkwoodForce
- getInducedDipoles() : AmoebaMultipoleForce
- getIntegrator() : Context
- getInteractionGroupParameters() : CustomNonbondedForce
- getKineticEnergy() : State
- getKineticEnergyExpression() : CustomIntegrator
- getLocalPosition() : LocalCoordinatesSite
- getMapParameters() : CMAPTorsionForce
- getMinimizationErrorTolerance() : DrudeSCFIntegrator
- getMolecules() : Context
- getMultipoleParameters() : AmoebaMultipoleForce
- getMutualInducedMaxIterations() : AmoebaMultipoleForce
- getMutualInducedTargetEpsilon() : AmoebaMultipoleForce
- getName() : Platform
- getNonbondedMethod() : AmoebaMultipoleForce , AmoebaVdwForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce , GBSAOBCForce , GBVIForce , NonbondedForce
- getNumAcceptors() : CustomHbondForce
- getNumAngles() : AmoebaAngleForce , AmoebaInPlaneAngleForce , CustomAngleForce , HarmonicAngleForce
- getNumBonds() : AmoebaBondForce , CustomBondForce , CustomCompoundBondForce , GBVIForce , HarmonicBondForce
- getNumComputations() : CustomIntegrator
- getNumComputedValues() : CustomGBForce
- getNumConstraints() : System
- getNumCopies() : RPMDIntegrator
- getNumDonors() : CustomHbondForce
- getNumEnergyTerms() : CustomGBForce
- getNumExceptions() : NonbondedForce
- getNumExclusions() : CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce
- getNumForces() : System
- getNumFrames() : GromacsGroFile , PDBFile , PDBxFile
- getNumFunctions() : CustomCompoundBondForce , CustomGBForce , CustomHbondForce , CustomNonbondedForce
- getNumGlobalParameters() : CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce , CustomTorsionForce
- getNumGlobalVariables() : CustomIntegrator
- getNumInteractionGroups() : CustomNonbondedForce
- getNumMaps() : CMAPTorsionForce
- getNumMultipoles() : AmoebaMultipoleForce
- getNumOutOfPlaneBends() : AmoebaOutOfPlaneBendForce
- getNumParticles() : AmoebaGeneralizedKirkwoodForce , AmoebaVdwForce , AmoebaWcaDispersionForce , CustomExternalForce , CustomGBForce , CustomManyParticleForce , CustomNonbondedForce , DrudeForce , GBSAOBCForce , GBVIForce , NonbondedForce , System , VirtualSite
- getNumParticlesPerBond() : CustomCompoundBondForce
- getNumParticlesPerSet() : CustomManyParticleForce
- getNumPerAcceptorParameters() : CustomHbondForce
- getNumPerAngleParameters() : CustomAngleForce
- getNumPerBondParameters() : CustomBondForce , CustomCompoundBondForce
- getNumPerDofVariables() : CustomIntegrator
- getNumPerDonorParameters() : CustomHbondForce
- getNumPerParticleParameters() : CustomExternalForce , CustomGBForce , CustomManyParticleForce , CustomNonbondedForce
- getNumPerTorsionParameters() : CustomTorsionForce
- getNumPiTorsions() : AmoebaPiTorsionForce
- getNumPlatforms : Platform
- getNumScreenedPairs() : DrudeForce
- getNumStretchBends() : AmoebaStretchBendForce
- getNumTabulatedFunctions() : CustomCompoundBondForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce
- getNumTorsions() : CMAPTorsionForce , CustomTorsionForce , PeriodicTorsionForce , RBTorsionForce
- getNumTorsionTorsionGrids() : AmoebaTorsionTorsionForce
- getNumTorsionTorsions() : AmoebaTorsionTorsionForce
- getOpenMMVersion : Platform
- getOriginWeights() : LocalCoordinatesSite
- getOutOfPlaneBendParameters() : AmoebaOutOfPlaneBendForce
- getParameter() : Context
- getParameters() : State
- getParticle() : VirtualSite
- getParticleExclusions() : AmoebaVdwForce
- getParticleMass() : System
- getParticleParameters() : AmoebaGeneralizedKirkwoodForce , AmoebaVdwForce , AmoebaWcaDispersionForce , CustomExternalForce , CustomGBForce , CustomManyParticleForce , CustomNonbondedForce , DrudeForce , GBSAOBCForce , GBVIForce , NonbondedForce
- getPerAcceptorParameterName() : CustomHbondForce
- getPerAngleParameterName() : CustomAngleForce
- getPerBondParameterName() : CustomBondForce , CustomCompoundBondForce
- getPerDofVariable() : CustomIntegrator
- getPerDofVariableByName() : CustomIntegrator
- getPerDofVariableName() : CustomIntegrator
- getPerDonorParameterName() : CustomHbondForce
- getPeriodicBoxVectors() : GromacsGroFile , Topology , State
- getPeriodicBoxVolume() : State
- getPermutationMode() : CustomManyParticleForce
- getPerParticleParameterName() : CustomExternalForce , CustomGBForce , CustomManyParticleForce , CustomNonbondedForce
- getPerTorsionParameterName() : CustomTorsionForce
- getPiTorsionParameters() : AmoebaPiTorsionForce
- getPlatform() : Context , Platform
- getPlatformByName() : Platform
- getPluginLoadFailures() : Platform
- getPmeBSplineOrder() : AmoebaMultipoleForce
- getPmeGridDimensions() : AmoebaMultipoleForce
- getPMEParameters() : NonbondedForce
- getPolarizationType() : AmoebaMultipoleForce
- getPositions() : AmberInpcrdFile , DesmondDMSFile , GromacsGroFile , Modeller , PDBFile , PDBxFile , State
- getPotentialEnergy() : State
- getProbeRadius() : AmoebaGeneralizedKirkwoodForce
- getPropertyDefaultValue() : Platform
- getPropertyNames() : Platform
- getPropertyValue() : Platform
- getProvenance() : DesmondDMSFile
- getQuinticLowerLimitFactor() : GBVIForce
- getQuinticUpperBornRadiusLimit() : GBVIForce
- getRandomNumberSeed() : AndersenThermostat , BrownianIntegrator , CustomIntegrator , DrudeLangevinIntegrator , LangevinIntegrator , MonteCarloAnisotropicBarostat , MonteCarloBarostat , MonteCarloMembraneBarostat , RPMDIntegrator , RPMDMonteCarloBarostat , VariableLangevinIntegrator
- getReactionFieldDielectric() : NonbondedForce
- getReciprocalSpaceForceGroup() : NonbondedForce
- getRminh() : AmoebaWcaDispersionForce
- getRmino() : AmoebaWcaDispersionForce
- getScaleX() : MonteCarloAnisotropicBarostat
- getScaleY() : MonteCarloAnisotropicBarostat
- getScaleZ() : MonteCarloAnisotropicBarostat
- getScreenedPairParameters() : DrudeForce
- getShctd() : AmoebaWcaDispersionForce
- getSigmaCombiningRule() : AmoebaVdwForce
- getSlevy() : AmoebaWcaDispersionForce
- getSoluteDielectric() : AmoebaGeneralizedKirkwoodForce , GBSAOBCForce , GBVIForce
- getSolventDielectric() : AmoebaGeneralizedKirkwoodForce , GBSAOBCForce , GBVIForce
- getSpeed() : Platform
- getState() : Context , RPMDIntegrator
- getStepSize() : Integrator
- getStretchBendParameters() : AmoebaStretchBendForce
- getSurfaceAreaEnergy() : GBSAOBCForce
- getSurfaceAreaFactor() : AmoebaGeneralizedKirkwoodForce
- getSwitchingDistance() : CustomNonbondedForce , NonbondedForce
- getSystem() : Context
- getSystemMultipoleMoments() : AmoebaMultipoleForce
- getTabulatedFunction() : CustomCompoundBondForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce
- getTabulatedFunctionName() : CustomCompoundBondForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce
- getTemperature() : BrownianIntegrator , DrudeLangevinIntegrator , LangevinIntegrator , MonteCarloAnisotropicBarostat , MonteCarloBarostat , MonteCarloMembraneBarostat , RPMDIntegrator , VariableLangevinIntegrator
- getTime() : State
- getTopology() : DesmondDMSFile , Modeller , PDBFile , PDBxFile
- getTorsionParameters() : CMAPTorsionForce , CustomTorsionForce , PeriodicTorsionForce , RBTorsionForce
- getTorsionTorsionGrid() : AmoebaTorsionTorsionForce
- getTorsionTorsionParameters() : AmoebaTorsionTorsionForce
- getTotalEnergy() : RPMDIntegrator
- getTypeFilter() : CustomManyParticleForce
- getUnitCellDimensions() : GromacsGroFile , Topology
- getUseDispersionCorrection() : AmoebaVdwForce , NonbondedForce
- getUseLongRangeCorrection() : CustomNonbondedForce
- getUseSwitchingFunction() : CustomNonbondedForce , NonbondedForce
- getVelocities() : AmberInpcrdFile , State
- getVirtualSite() : System
- getWeight() : ThreeParticleAverageSite , TwoParticleAverageSite
- getWeight12() : OutOfPlaneSite
- getWeight13() : OutOfPlaneSite
- getWeightCross() : OutOfPlaneSite
- getXWeights() : LocalCoordinatesSite
- getXYMode() : MonteCarloMembraneBarostat
- getYWeights() : LocalCoordinatesSite
- getZMode() : MonteCarloMembraneBarostat
- group_list : CharmmPsfFile