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### - c -

- chains() : Topology
- close() : DesmondDMSFile
- CollisionFrequency() : AndersenThermostat
- computeVirtualSites() : Context
- condense() : CharmmParameterSet
- convertWater() : Modeller
- Copy() : Continuous1DFunction , Continuous2DFunction , Continuous3DFunction , Discrete1DFunction , Discrete2DFunction , Discrete3DFunction , TabulatedFunction
- createCheckpoint() : Context
- createDisulfideBonds() : Topology
- createExceptionsFromBonds() : NonbondedForce
- createExclusionsFromBonds() : CustomManyParticleForce , CustomNonbondedForce
- createStandardBonds() : Topology
- createSystem() : AmberPrmtopFile , CharmmPsfFile , DesmondDMSFile , ForceField , GromacsTopFile