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- cleanup() : BrownianIntegrator , CustomIntegrator , DrudeLangevinIntegrator , DrudeSCFIntegrator , Integrator , LangevinIntegrator , RPMDIntegrator , VariableLangevinIntegrator , VariableVerletIntegrator , VerletIntegrator
- CMAPTorsionForce() : CMAPTorsionForce
- CMMotionRemover() : CMMotionRemover
- CollisionFrequency() : AndersenThermostat
- computeKineticEnergy() : BrownianIntegrator , CustomIntegrator , DrudeLangevinIntegrator , DrudeSCFIntegrator , Integrator , LangevinIntegrator , RPMDIntegrator , VariableLangevinIntegrator , VariableVerletIntegrator , VerletIntegrator
- computeVirtualSites() : Context
- Context() : Context
- contextCreated() : Platform
- contextDestroyed() : Platform
- Continuous1DFunction() : Continuous1DFunction
- Continuous2DFunction() : Continuous2DFunction
- Continuous3DFunction() : Continuous3DFunction
- Copy() : Continuous1DFunction , Continuous2DFunction , Continuous3DFunction , Discrete1DFunction , Discrete2DFunction , Discrete3DFunction , TabulatedFunction
- createCheckpoint() : Context
- createExceptionsFromBonds() : NonbondedForce
- createExclusionsFromBonds() : CustomManyParticleForce , CustomNonbondedForce
- createImpl() : AmoebaAngleForce , AmoebaBondForce , AmoebaGeneralizedKirkwoodForce , AmoebaInPlaneAngleForce , AmoebaMultipoleForce , AmoebaOutOfPlaneBendForce , AmoebaPiTorsionForce , AmoebaStretchBendForce , AmoebaTorsionTorsionForce , AmoebaVdwForce , AmoebaWcaDispersionForce , AndersenThermostat , CMAPTorsionForce , CMMotionRemover , CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce , CustomTorsionForce , DrudeForce , Force , GBSAOBCForce , GBVIForce , HarmonicAngleForce , HarmonicBondForce , MonteCarloAnisotropicBarostat , MonteCarloBarostat , MonteCarloMembraneBarostat , NonbondedForce , PeriodicTorsionForce , RBTorsionForce , RPMDMonteCarloBarostat
- createKernel() : Platform
- createKernelImpl() : KernelFactory
- cross() : Vec3
- CustomAngleForce() : CustomAngleForce
- CustomBondForce() : CustomBondForce
- CustomCompoundBondForce() : CustomCompoundBondForce
- CustomExternalForce() : CustomExternalForce
- CustomGBForce() : CustomGBForce
- CustomHbondForce() : CustomHbondForce
- CustomIntegrator() : CustomIntegrator
- CustomManyParticleForce() : CustomManyParticleForce
- CustomNonbondedForce() : CustomNonbondedForce
- CustomTorsionForce() : CustomTorsionForce