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### - c -

- calcDispersionCorrection() : AmoebaVdwForceImpl , NonbondedForceImpl
- calcEwaldParameters() : NonbondedForceImpl
- calcForcesAndEnergy() : AmoebaAngleForceImpl , AmoebaBondForceImpl , AmoebaGeneralizedKirkwoodForceImpl , AmoebaInPlaneAngleForceImpl , AmoebaMultipoleForceImpl , AmoebaOutOfPlaneBendForceImpl , AmoebaPiTorsionForceImpl , AmoebaStretchBendForceImpl , AmoebaTorsionTorsionForceImpl , AmoebaVdwForceImpl , AmoebaWcaDispersionForceImpl , AndersenThermostatImpl , CMAPTorsionForceImpl , CMMotionRemoverImpl , ContextImpl , CustomAngleForceImpl , CustomBondForceImpl , CustomCompoundBondForceImpl , CustomExternalForceImpl , CustomGBForceImpl , CustomHbondForceImpl , CustomManyParticleForceImpl , CustomNonbondedForceImpl , CustomTorsionForceImpl , DrudeForceImpl , ForceImpl , GBSAOBCForceImpl , GBVIForceImpl , HarmonicAngleForceImpl , HarmonicBondForceImpl , MonteCarloAnisotropicBarostatImpl , MonteCarloBarostatImpl , MonteCarloMembraneBarostatImpl , NonbondedForceImpl , PeriodicTorsionForceImpl , RBTorsionForceImpl
- calcKineticEnergy() : ContextImpl
- calcLongRangeCorrection() : CustomNonbondedForceImpl
- calcMapDerivatives() : CMAPTorsionForceImpl
- calcParticleGroups() : AndersenThermostatImpl
- calcPMEParameters() : NonbondedForceImpl
- cleanup() : BrownianIntegrator , CustomIntegrator , DrudeLangevinIntegrator , DrudeSCFIntegrator , Integrator , LangevinIntegrator , RPMDIntegrator , VariableLangevinIntegrator , VariableVerletIntegrator , VerletIntegrator
- CMAPTorsionForce() : CMAPTorsionForce
- CMAPTorsionForceImpl() : CMAPTorsionForceImpl
- CMMotionRemover() : CMMotionRemover
- CMMotionRemoverImpl() : CMMotionRemoverImpl
- CollisionFrequency() : AndersenThermostat
- computeKineticEnergy() : BrownianIntegrator , CustomIntegrator , DrudeLangevinIntegrator , DrudeSCFIntegrator , Integrator , LangevinIntegrator , RPMDIntegrator , VariableLangevinIntegrator , VariableVerletIntegrator , VerletIntegrator
- computeVirtualSites() : Context , ContextImpl
- Context() : Context
- contextCreated() : Platform
- contextDestroyed() : Platform
- ContextImpl() : ContextImpl
- Continuous1DFunction() : Continuous1DFunction
- Continuous2DFunction() : Continuous2DFunction
- Continuous3DFunction() : Continuous3DFunction
- Copy() : Continuous1DFunction , Continuous2DFunction , Continuous3DFunction , Discrete1DFunction , Discrete2DFunction , Discrete3DFunction , TabulatedFunction
- create2DNaturalSpline() : SplineFitter
- create3DNaturalSpline() : SplineFitter
- createCheckpoint() : Context , ContextImpl
- createExceptionsFromBonds() : NonbondedForce
- createExclusionsFromBonds() : CustomManyParticleForce , CustomNonbondedForce
- createImpl() : AmoebaAngleForce , AmoebaBondForce , AmoebaGeneralizedKirkwoodForce , AmoebaInPlaneAngleForce , AmoebaMultipoleForce , AmoebaOutOfPlaneBendForce , AmoebaPiTorsionForce , AmoebaStretchBendForce , AmoebaTorsionTorsionForce , AmoebaVdwForce , AmoebaWcaDispersionForce , AndersenThermostat , CMAPTorsionForce , CMMotionRemover , CustomAngleForce , CustomBondForce , CustomCompoundBondForce , CustomExternalForce , CustomGBForce , CustomHbondForce , CustomManyParticleForce , CustomNonbondedForce , CustomTorsionForce , DrudeForce , Force , GBSAOBCForce , GBVIForce , HarmonicAngleForce , HarmonicBondForce , MonteCarloAnisotropicBarostat , MonteCarloBarostat , MonteCarloMembraneBarostat , NonbondedForce , PeriodicTorsionForce , RBTorsionForce
- createKernel() : Platform
- createKernelImpl() : KernelFactory
- createNaturalSpline() : SplineFitter
- createPeriodicSpline() : SplineFitter
- cross() : Vec3
- CustomAngleForce() : CustomAngleForce
- CustomAngleForceImpl() : CustomAngleForceImpl
- CustomBondForce() : CustomBondForce
- CustomBondForceImpl() : CustomBondForceImpl
- CustomCompoundBondForce() : CustomCompoundBondForce
- CustomCompoundBondForceImpl() : CustomCompoundBondForceImpl
- CustomExternalForce() : CustomExternalForce
- CustomExternalForceImpl() : CustomExternalForceImpl
- CustomGBForce() : CustomGBForce
- CustomGBForceImpl() : CustomGBForceImpl
- CustomHbondForce() : CustomHbondForce
- CustomHbondForceImpl() : CustomHbondForceImpl
- CustomIntegrator() : CustomIntegrator
- CustomManyParticleForce() : CustomManyParticleForce
- CustomManyParticleForceImpl() : CustomManyParticleForceImpl
- CustomNonbondedForce() : CustomNonbondedForce
- CustomNonbondedForceImpl() : CustomNonbondedForceImpl
- CustomTorsionForce() : CustomTorsionForce
- CustomTorsionForceImpl() : CustomTorsionForceImpl