from __future__ import absolute_import

from .atom_indices import AtomIndices
from .convert_chunked_project import ConvertChunkedProject
from .example_datasets import AlanineDipeptideDatasetCommand
from .featurizer import (AtomPairsFeaturizerCommand, ContactFeaturizerCommand,
                         DihedralFeaturizerCommand, DRIDFeaturizerCommand,
                         SuperposeFeaturizerCommand,
                         KappaAngleFeaturizerCommand,
                         AlphaAngleFeaturizerCommand, RMSDFeaturizerCommand,
                         LandMarkRMSDFeaturizerCommand,
                         BinaryContactFeaturizerCommand,
                         LogisticContactFeaturizerCommand,
                         VonMisesFeaturizerCommand,
                         RawPositionsFeaturizerCommand, SASAFeaturizerCommand,
                         LigandContactFeaturizerCommand,
                         BinaryLigandContactFeaturizerCommand,
                         LigandRMSDFeaturizerCommand)
from .fit import (GaussianHMMCommand, MarkovStateModelCommand,
                  BayesianMarkovStateModelCommand, ContinuousTimeMSMCommand,
                  BayesianContinuousTimeMSMCommand)

try:
    from .fit_transform import RobustScalerCommand, StandardScalerCommand
except:
    pass

from .fit_transform import (tICACommand, ButterworthCommand, DoubleEWMACommand,
                            SparseTICACommand, FastICACommand,
                            FactorAnalysisCommand, KernelTICACommand,
                            PCACommand, SparsePCACommand,
                            MiniBatchSparsePCACommand,
                            KMeansCommand, MiniBatchKMeansCommand,
                            KCentersCommand, KMedoidsCommand,
                            MiniBatchKMedoidsCommand, RegularSpatialCommand,
                            LandmarkAgglomerativeCommand, GMMCommand,
                            MeanShiftCommand, NDGridCommand,
                            SpectralClusteringCommand,
                            AffinityPropagationCommand, APMCommand,
                            AgglomerativeClusteringCommand, KSparseTICACommand)
from .transform import TransformCommand
from .example_datasets import (AlanineDipeptideDatasetCommand,
                               FsPeptideDatasetCommand)
from .atom_indices import AtomIndices
from .implied_timescales import ImpliedTimescales
from .template_project import TemplateProjectCommand
from .transform import TransformCommand
