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Yank/__init__.py
Yank/analyze.py
Yank/cli.py
Yank/pipeline.py
Yank/repex.py
Yank/restraints.py
Yank/sampling.py
Yank/systembuilder.py
Yank/utils.py
Yank/version.py
Yank/yamlbuild.py
Yank/yank.py
Yank/../examples/README.md
Yank/../examples/abl-imatinib-explicit/render_trajectory.py
Yank/../examples/abl-imatinib-explicit/run-torque-extend.sh
Yank/../examples/abl-imatinib-explicit/run-torque.sh
Yank/../examples/abl-imatinib-explicit/run.sh
Yank/../examples/abl-imatinib-explicit/visualize.tcsh
Yank/../examples/abl-imatinib-explicit/yank.yaml
Yank/../examples/abl-imatinib-explicit/setup/2HYY-pdbfixer.pdb
Yank/../examples/abl-imatinib-explicit/setup/2HYY.pdb
Yank/../examples/abl-imatinib-explicit/setup/README.md
Yank/../examples/abl-imatinib-explicit/setup/STI-extract.pdb
Yank/../examples/abl-imatinib-explicit/setup/STI02.mol2
Yank/../examples/abl-imatinib-explicit/setup/complex.inpcrd
Yank/../examples/abl-imatinib-explicit/setup/complex.pdb
Yank/../examples/abl-imatinib-explicit/setup/complex.prmtop
Yank/../examples/abl-imatinib-explicit/setup/setup.leap.in
Yank/../examples/abl-imatinib-explicit/setup/setup.sh
Yank/../examples/abl-imatinib-explicit/setup/solvent.inpcrd
Yank/../examples/abl-imatinib-explicit/setup/solvent.pdb
Yank/../examples/abl-imatinib-explicit/setup/solvent.prmtop
Yank/../examples/abl-imatinib-explicit/setup/vacuum.inpcrd
Yank/../examples/abl-imatinib-explicit/setup/vacuum.pdb
Yank/../examples/abl-imatinib-explicit/setup/vacuum.prmtop
Yank/../examples/abl-imatinib-implicit/run-torque-extend.sh
Yank/../examples/abl-imatinib-implicit/run-torque.sh
Yank/../examples/abl-imatinib-implicit/run.sh
Yank/../examples/abl-imatinib-implicit/setup/2HYY-pdbfixer.pdb
Yank/../examples/abl-imatinib-implicit/setup/2HYY.pdb
Yank/../examples/abl-imatinib-implicit/setup/README.md
Yank/../examples/abl-imatinib-implicit/setup/STI-extract.pdb
Yank/../examples/abl-imatinib-implicit/setup/STI02.mol2
Yank/../examples/abl-imatinib-implicit/setup/complex.inpcrd
Yank/../examples/abl-imatinib-implicit/setup/complex.pdb
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Yank/../examples/abl-imatinib-implicit/setup/setup.sh
Yank/../examples/abl-imatinib-implicit/setup/solvent.inpcrd
Yank/../examples/abl-imatinib-implicit/setup/solvent.pdb
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Yank/../examples/abl-imatinib-implicit/setup/vacuum.inpcrd
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Yank/../examples/benzene-toluene-explicit/README.md
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Yank/../examples/benzene-toluene-explicit/setup/benzene.frcmod
Yank/../examples/benzene-toluene-explicit/setup/benzene.gaff.mol2
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Yank/../examples/benzene-toluene-explicit/setup/complex.pdb
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Yank/../examples/benzene-toluene-explicit/setup/generate-molecules.py
Yank/../examples/benzene-toluene-explicit/setup/receptor.prmtop
Yank/../examples/benzene-toluene-explicit/setup/setup.leap.in
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Yank/../examples/p-xylene-implicit/setup/sqm.pdb
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Yank/../examples/s-alpha-ionone-explicit/README.md
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Yank/../examples/s-alpha-ionone-explicit/setup/IC6.frcmod
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Yank/../examples/s-alpha-ionone-explicit/setup/md.mdp
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Yank/../examples/s-alpha-ionone-explicit/setup/s-a-ion.prepin
Yank/../examples/s-alpha-ionone-explicit/setup/s-a-ion.prepin.bu
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Yank/../examples/tip3p-in-tip3p/setup/setup.sh
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Yank/../examples/tip3p-in-tip3p/setup/solvent.prmtop
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Yank/../examples/tip3p-in-tip3p/setup/vacuum.pdb
Yank/../examples/tip3p-in-tip3p/setup/vacuum.prmtop
Yank/../examples/yank-yaml-cookbook/README.md
Yank/../examples/yank-yaml-cookbook/all-options.yaml
Yank/../examples/yank-yaml-cookbook/combinatorial-experiment.yaml
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Yank/mixing/_mix_replicas_old.py
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Yank/tests/test_commands.py
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yank.egg-info/dependency_links.txt
yank.egg-info/entry_points.txt
yank.egg-info/not-zip-safe
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