README.md
setup.py
Yank/__init__.py
Yank/analyze.py
Yank/cli.py
Yank/experiment.py
Yank/pipeline.py
Yank/restraints.py
Yank/utils.py
Yank/version.py
Yank/yank.py
Yank/commands/__init__.py
Yank/commands/analyze.py
Yank/commands/cite.py
Yank/commands/cleanup.py
Yank/commands/help.py
Yank/commands/platforms.py
Yank/commands/script.py
Yank/commands/selftest.py
Yank/commands/status.py
Yank/reports/YANK_Health_Report_Example.ipynb
Yank/reports/YANK_Health_Report_Template.ipynb
Yank/reports/__init__.py
Yank/reports/notebook.py
Yank/schema/__init__.py
Yank/schema/validator.py
Yank/tests/__init__.py
Yank/tests/test_analyze.py
Yank/tests/test_cli.py
Yank/tests/test_examples.py
Yank/tests/test_experiment.py
Yank/tests/test_pipeline.py
Yank/tests/test_restraints.py
Yank/tests/test_schema.py
Yank/tests/test_utils.py
Yank/tests/test_yank.py
Yank/tests/data/README.md
Yank/tests/data/abl-imatinib-explicit/2HYY-pdbfixer.pdb
Yank/tests/data/abl-imatinib-explicit/STI02.mol2
Yank/tests/data/benzene-toluene-explicit/benzene.frcmod
Yank/tests/data/benzene-toluene-explicit/benzene.gaff.mol2
Yank/tests/data/benzene-toluene-explicit/benzene.tripos.mol2
Yank/tests/data/benzene-toluene-explicit/complex.inpcrd
Yank/tests/data/benzene-toluene-explicit/complex.prmtop
Yank/tests/data/benzene-toluene-explicit/solvent.inpcrd
Yank/tests/data/benzene-toluene-explicit/solvent.prmtop
Yank/tests/data/benzene-toluene-explicit/toluene.frcmod
Yank/tests/data/benzene-toluene-explicit/toluene.tripos.mol2
Yank/tests/data/benzene-toluene-standard-state/README.md
Yank/tests/data/benzene-toluene-standard-state/standard_state_complex.inpcrd
Yank/tests/data/benzene-toluene-standard-state/standard_state_complex.prmtop
Yank/tests/data/benzene-toluene-standard-state/standard_state_complex_boxless.inpcrd
Yank/tests/data/benzene-toluene-standard-state/standard_state_complex_nan.inpcrd
Yank/tests/data/p-xylene-gromacs-example/complex.gro
Yank/tests/data/p-xylene-gromacs-example/complex.top
Yank/tests/data/p-xylene-gromacs-example/solvent.gro
Yank/tests/data/p-xylene-gromacs-example/solvent.top
Yank/tests/data/p-xylene-gromacs-example/top/p-xyle.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/atomtypes.atp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/cmap.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/ffbonded.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/ffnonbonded.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/forcefield.doc
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/forcefield.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/gb.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/ions.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/merged.arn
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/merged.c.tdb
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/merged.hdb
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/merged.n.tdb
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/merged.r2b
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/merged.rtp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/merged.vsd
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/nbfix.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/spc.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/spce.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/tip3p.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/tip4p.itp
Yank/tests/data/p-xylene-gromacs-example/top/charmm36.ff/watermodels.dat
Yank/tests/data/p-xylene-implicit/181L-pdbfixer.pdb
Yank/tests/data/p-xylene-implicit/p-xylene.mol2
Yank/tests/data/toluene-explicit/solvent.pdb
Yank/tests/data/toluene-explicit/solvent.xml
Yank/tests/data/toluene-explicit/vacuum.pdb
Yank/tests/data/toluene-explicit/vacuum.xml
yank.egg-info/PKG-INFO
yank.egg-info/SOURCES.txt
yank.egg-info/dependency_links.txt
yank.egg-info/entry_points.txt
yank.egg-info/not-zip-safe
yank.egg-info/top_level.txt