setup.py
openmoltools/__init__.py
openmoltools/acpype.py
openmoltools/amber.py
openmoltools/amber_parser.py
openmoltools/cirpy.py
openmoltools/gromacs.py
openmoltools/openeye.py
openmoltools/packmol.py
openmoltools/six.py
openmoltools/system_checker.py
openmoltools/utils.py
openmoltools.egg-info/PKG-INFO
openmoltools.egg-info/SOURCES.txt
openmoltools.egg-info/dependency_links.txt
openmoltools.egg-info/not-zip-safe
openmoltools.egg-info/top_level.txt
openmoltools/chemicals/acetate/ANTECHAMBER_AC.AC
openmoltools/chemicals/acetate/ANTECHAMBER_AC.AC0
openmoltools/chemicals/acetate/ANTECHAMBER_AM1BCC.AC
openmoltools/chemicals/acetate/ANTECHAMBER_AM1BCC_PRE.AC
openmoltools/chemicals/acetate/ANTECHAMBER_BOND_TYPE.AC
openmoltools/chemicals/acetate/ANTECHAMBER_BOND_TYPE.AC0
openmoltools/chemicals/acetate/ATOMTYPE.INF
openmoltools/chemicals/acetate/acetate.frcmod
openmoltools/chemicals/acetate/acetate.gaff.mol2
openmoltools/chemicals/acetate/acetate.mol2
openmoltools/chemicals/acetate/sqm.in
openmoltools/chemicals/acetate/sqm.out
openmoltools/chemicals/acetate/sqm.pdb
openmoltools/chemicals/benzene/ANTECHAMBER_AC.AC
openmoltools/chemicals/benzene/ANTECHAMBER_AC.AC0
openmoltools/chemicals/benzene/ANTECHAMBER_AM1BCC.AC
openmoltools/chemicals/benzene/ANTECHAMBER_AM1BCC_PRE.AC
openmoltools/chemicals/benzene/ANTECHAMBER_BOND_TYPE.AC
openmoltools/chemicals/benzene/ANTECHAMBER_BOND_TYPE.AC0
openmoltools/chemicals/benzene/ATOMTYPE.INF
openmoltools/chemicals/benzene/benzene.frcmod
openmoltools/chemicals/benzene/benzene.inpcrd
openmoltools/chemicals/benzene/benzene.lib
openmoltools/chemicals/benzene/benzene.mol2
openmoltools/chemicals/benzene/benzene.pdb
openmoltools/chemicals/benzene/benzene.prmtop
openmoltools/chemicals/benzene/benzene.sdf
openmoltools/chemicals/benzene/benzene.xml
openmoltools/chemicals/benzene/leap.log
openmoltools/chemicals/benzene/sqm.in
openmoltools/chemicals/benzene/sqm.out
openmoltools/chemicals/benzene/sqm.pdb
openmoltools/chemicals/cyclopropane/ANTECHAMBER_AC.AC
openmoltools/chemicals/cyclopropane/ANTECHAMBER_AC.AC0
openmoltools/chemicals/cyclopropane/ANTECHAMBER_AM1BCC.AC
openmoltools/chemicals/cyclopropane/ANTECHAMBER_AM1BCC_PRE.AC
openmoltools/chemicals/cyclopropane/ANTECHAMBER_BOND_TYPE.AC
openmoltools/chemicals/cyclopropane/ANTECHAMBER_BOND_TYPE.AC0
openmoltools/chemicals/cyclopropane/ATOMTYPE.INF
openmoltools/chemicals/cyclopropane/cyclopropane.frcmod
openmoltools/chemicals/cyclopropane/cyclopropane.inpcrd
openmoltools/chemicals/cyclopropane/cyclopropane.lib
openmoltools/chemicals/cyclopropane/cyclopropane.mol2
openmoltools/chemicals/cyclopropane/cyclopropane.pdb
openmoltools/chemicals/cyclopropane/cyclopropane.prmtop
openmoltools/chemicals/cyclopropane/cyclopropane.sdf
openmoltools/chemicals/cyclopropane/cyclopropane.xml
openmoltools/chemicals/cyclopropane/leap.log
openmoltools/chemicals/cyclopropane/sqm.in
openmoltools/chemicals/cyclopropane/sqm.out
openmoltools/chemicals/cyclopropane/sqm.pdb
openmoltools/chemicals/drugs/README.md
openmoltools/chemicals/drugs/Zdd.mol2.gz
openmoltools/chemicals/drugs/usual.mol2.csh
openmoltools/chemicals/ethene/ANTECHAMBER_AC.AC
openmoltools/chemicals/ethene/ANTECHAMBER_AC.AC0
openmoltools/chemicals/ethene/ANTECHAMBER_AM1BCC.AC
openmoltools/chemicals/ethene/ANTECHAMBER_AM1BCC_PRE.AC
openmoltools/chemicals/ethene/ANTECHAMBER_BOND_TYPE.AC
openmoltools/chemicals/ethene/ANTECHAMBER_BOND_TYPE.AC0
openmoltools/chemicals/ethene/ATOMTYPE.INF
openmoltools/chemicals/ethene/ethene.frcmod
openmoltools/chemicals/ethene/ethene.inpcrd
openmoltools/chemicals/ethene/ethene.lib
openmoltools/chemicals/ethene/ethene.mol2
openmoltools/chemicals/ethene/ethene.pdb
openmoltools/chemicals/ethene/ethene.prmtop
openmoltools/chemicals/ethene/ethene.sdf
openmoltools/chemicals/ethene/ethene.xml
openmoltools/chemicals/ethene/leap.log
openmoltools/chemicals/ethene/sqm.in
openmoltools/chemicals/ethene/sqm.out
openmoltools/chemicals/ethene/sqm.pdb
openmoltools/chemicals/etoh/ANTECHAMBER_AC.AC
openmoltools/chemicals/etoh/ANTECHAMBER_AC.AC0
openmoltools/chemicals/etoh/ANTECHAMBER_AM1BCC.AC
openmoltools/chemicals/etoh/ANTECHAMBER_AM1BCC_PRE.AC
openmoltools/chemicals/etoh/ANTECHAMBER_BOND_TYPE.AC
openmoltools/chemicals/etoh/ANTECHAMBER_BOND_TYPE.AC0
openmoltools/chemicals/etoh/ATOMTYPE.INF
openmoltools/chemicals/etoh/etoh.frcmod
openmoltools/chemicals/etoh/etoh.inpcrd
openmoltools/chemicals/etoh/etoh.lib
openmoltools/chemicals/etoh/etoh.mol2
openmoltools/chemicals/etoh/etoh.pdb
openmoltools/chemicals/etoh/etoh.prmtop
openmoltools/chemicals/etoh/etoh.sdf
openmoltools/chemicals/etoh/etoh.xml
openmoltools/chemicals/etoh/etoh_renamed.mol2
openmoltools/chemicals/etoh/leap.log
openmoltools/chemicals/etoh/sqm.in
openmoltools/chemicals/etoh/sqm.out
openmoltools/chemicals/etoh/sqm.pdb
openmoltools/chemicals/freesolv/freesolve_v0.3.tar.bz2
openmoltools/chemicals/imatinib/ANTECHAMBER_AC.AC
openmoltools/chemicals/imatinib/ANTECHAMBER_AC.AC0
openmoltools/chemicals/imatinib/ANTECHAMBER_AM1BCC.AC
openmoltools/chemicals/imatinib/ANTECHAMBER_AM1BCC_PRE.AC
openmoltools/chemicals/imatinib/ANTECHAMBER_BOND_TYPE.AC
openmoltools/chemicals/imatinib/ANTECHAMBER_BOND_TYPE.AC0
openmoltools/chemicals/imatinib/ATOMTYPE.INF
openmoltools/chemicals/imatinib/imatinib.frcmod
openmoltools/chemicals/imatinib/imatinib.inpcrd
openmoltools/chemicals/imatinib/imatinib.lib
openmoltools/chemicals/imatinib/imatinib.mol2
openmoltools/chemicals/imatinib/imatinib.pdb
openmoltools/chemicals/imatinib/imatinib.prmtop
openmoltools/chemicals/imatinib/imatinib.sdf
openmoltools/chemicals/imatinib/imatinib.xml
openmoltools/chemicals/imatinib/leap.log
openmoltools/chemicals/imatinib/sqm.in
openmoltools/chemicals/imatinib/sqm.out
openmoltools/chemicals/imatinib/sqm.pdb
openmoltools/chemicals/propene/ANTECHAMBER_AC.AC
openmoltools/chemicals/propene/ANTECHAMBER_AC.AC0
openmoltools/chemicals/propene/ANTECHAMBER_AM1BCC.AC
openmoltools/chemicals/propene/ANTECHAMBER_AM1BCC_PRE.AC
openmoltools/chemicals/propene/ANTECHAMBER_BOND_TYPE.AC
openmoltools/chemicals/propene/ANTECHAMBER_BOND_TYPE.AC0
openmoltools/chemicals/propene/ATOMTYPE.INF
openmoltools/chemicals/propene/leap.log
openmoltools/chemicals/propene/propene.frcmod
openmoltools/chemicals/propene/propene.inpcrd
openmoltools/chemicals/propene/propene.lib
openmoltools/chemicals/propene/propene.mol2
openmoltools/chemicals/propene/propene.pdb
openmoltools/chemicals/propene/propene.prmtop
openmoltools/chemicals/propene/propene.sdf
openmoltools/chemicals/propene/propene.xml
openmoltools/chemicals/propene/sqm.in
openmoltools/chemicals/propene/sqm.out
openmoltools/chemicals/propene/sqm.pdb
openmoltools/chemicals/proteins/1vii.pdb
openmoltools/chemicals/sustiva/ANTECHAMBER_AC.AC
openmoltools/chemicals/sustiva/ANTECHAMBER_AC.AC0
openmoltools/chemicals/sustiva/ANTECHAMBER_AM1BCC.AC
openmoltools/chemicals/sustiva/ANTECHAMBER_AM1BCC_PRE.AC
openmoltools/chemicals/sustiva/ANTECHAMBER_BOND_TYPE.AC
openmoltools/chemicals/sustiva/ANTECHAMBER_BOND_TYPE.AC0
openmoltools/chemicals/sustiva/ATOMTYPE.INF
openmoltools/chemicals/sustiva/leap.log
openmoltools/chemicals/sustiva/sqm.in
openmoltools/chemicals/sustiva/sqm.out
openmoltools/chemicals/sustiva/sqm.pdb
openmoltools/chemicals/sustiva/sus.lib
openmoltools/chemicals/sustiva/sustiva.frcmod
openmoltools/chemicals/sustiva/sustiva.frcmod.xml
openmoltools/chemicals/sustiva/sustiva.inpcrd
openmoltools/chemicals/sustiva/sustiva.lib
openmoltools/chemicals/sustiva/sustiva.mol2
openmoltools/chemicals/sustiva/sustiva.pdb
openmoltools/chemicals/sustiva/sustiva.prmtop
openmoltools/chemicals/sustiva/sustiva.sdf
openmoltools/chemicals/sustiva/sustiva.xml
openmoltools/chemicals/sustiva/test.pdb
openmoltools/tests/test_amber.py
openmoltools/tests/test_common_molecules.py
openmoltools/tests/test_drugs.py
openmoltools/tests/test_drugs_no_oechem.py
openmoltools/tests/test_freesolv.py
openmoltools/tests/test_gromacs.py
openmoltools/tests/test_openeye.py
openmoltools/tests/test_packmol.py
openmoltools/tests/test_utils.py
scripts/generate_example_data.py
scripts/processAmberForceField.py