Here is a list of all class members with links to the classes they belong to:

### - a -

- acceptor_list : CharmmPsfFile
- add() : Modeller
- addAcceptor() : CustomHbondForce
- addAngle() : CustomAngleForce , AmoebaInPlaneAngleForce , HarmonicAngleForce , AmoebaAngleForce
- addAtom() : Topology
- addBond() : AmoebaBondForce , HarmonicBondForce , CustomBondForce , GBVIForce , CustomCompoundBondForce , Topology
- addChain() : Topology
- addComputedValue() : CustomGBForce
- addComputeGlobal() : CustomIntegrator
- addComputePerDof() : CustomIntegrator
- addComputeSum() : CustomIntegrator
- addConstrainPositions() : CustomIntegrator
- addConstraint() : System
- addConstrainVelocities() : CustomIntegrator
- addDonor() : CustomHbondForce
- addEnergyTerm() : CustomGBForce
- addException() : NonbondedForce
- addException_usingRMin() : NonbondedForce
- addExclusion() : CustomNonbondedForce , CustomHbondForce , CustomGBForce , CustomManyParticleForce
- addExtraParticles() : Modeller
- addForce() : System
- addFunction() : CustomNonbondedForce , CustomHbondForce , CustomGBForce , CustomCompoundBondForce
- addGlobalParameter() : CustomAngleForce , CustomExternalForce , CustomTorsionForce , CustomNonbondedForce , CustomHbondForce , CustomBondForce , CustomGBForce , CustomCompoundBondForce , CustomManyParticleForce
- addGlobalVariable() : CustomIntegrator
- addHydrogens() : Modeller
- addInteractionGroup() : CustomNonbondedForce
- addMap() : CMAPTorsionForce
- addMultipole() : AmoebaMultipoleForce
- addOutOfPlaneBend() : AmoebaOutOfPlaneBendForce
- addParticle() : CustomManyParticleForce , DrudeForce , CustomExternalForce , AmoebaGeneralizedKirkwoodForce , CustomNonbondedForce , NonbondedForce , System , CustomGBForce , GBVIForce , AmoebaWcaDispersionForce , AmoebaVdwForce , GBSAOBCForce
- addParticle_usingRVdw() : NonbondedForce
- addPerAcceptorParameter() : CustomHbondForce
- addPerAngleParameter() : CustomAngleForce
- addPerBondParameter() : CustomBondForce , CustomCompoundBondForce
- addPerDofVariable() : CustomIntegrator
- addPerDonorParameter() : CustomHbondForce
- addPerParticleParameter() : CustomNonbondedForce , CustomGBForce , CustomManyParticleForce , CustomExternalForce
- addPerTorsionParameter() : CustomTorsionForce
- addPiTorsion() : AmoebaPiTorsionForce
- addResidue() : Topology
- addScreenedPair() : DrudeForce
- addSolvent() : Modeller
- addStretchBend() : AmoebaStretchBendForce
- addTabulatedFunction() : CustomHbondForce , CustomNonbondedForce , CustomCompoundBondForce , CustomGBForce , CustomManyParticleForce
- addTorsion() : CMAPTorsionForce , CustomTorsionForce , RBTorsionForce , PeriodicTorsionForce
- addTorsionTorsion() : AmoebaTorsionTorsionForce
- addUpdateContextState() : CustomIntegrator
- ANGLE_FORCE_GROUP : CharmmPsfFile
- angle_list : CharmmPsfFile
- angle_types : CharmmParameterSet
- applyConstraints() : Context
- applyVelocityConstraints() : Context
- atom_list : CharmmPsfFile
- atom_types_int : CharmmParameterSet
- atom_types_str : CharmmParameterSet
- atom_types_tuple : CharmmParameterSet
- atomic_number() : Element
- atomNames : GromacsGroFile
- atomno : CharmmCrdFile
- atoms() : Residue , Topology , Chain
- attype : CharmmCrdFile