<?xml version='1.0' encoding='ISO-8859-1' standalone='yes' ?>
<tagfile>
  <compound kind="class">
    <name>simtk::openmm::app::amberinpcrdfile::AmberInpcrdFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1amberinpcrdfile_1_1AmberInpcrdFile.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberinpcrdfile_1_1AmberInpcrdFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberinpcrdfile_1_1AmberInpcrdFile.html</anchorfile>
      <anchor>a97b90d5998ed9203e18087203e3eef2a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getVelocities</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberinpcrdfile_1_1AmberInpcrdFile.html</anchorfile>
      <anchor>a97a2fb63e04d83fcc415dc877c2fb8bf</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getBoxVectors</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberinpcrdfile_1_1AmberInpcrdFile.html</anchorfile>
      <anchor>a6a8ca2519c1629aa50b5c92e2b4d5aa6</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>file</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberinpcrdfile_1_1AmberInpcrdFile.html</anchorfile>
      <anchor>a40a5d58ffa6e88aa578d6683ac413105</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>boxVectors</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberinpcrdfile_1_1AmberInpcrdFile.html</anchorfile>
      <anchor>aabbda0fda99622294dff39d18cd8f6e0</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::amberprmtopfile::HCT</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1HCT.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1HCT.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::amberprmtopfile::OBC1</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1OBC1.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1OBC1.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::amberprmtopfile::OBC2</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1OBC2.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1OBC2.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::amberprmtopfile::GBn</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1GBn.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1GBn.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::amberprmtopfile::GBn2</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1GBn2.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1GBn2.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::amberprmtopfile::AmberPrmtopFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1AmberPrmtopFile.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1AmberPrmtopFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createSystem</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1AmberPrmtopFile.html</anchorfile>
      <anchor>a04c2b6fd2a8d956129b2be4517534cc7</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>topology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1AmberPrmtopFile.html</anchorfile>
      <anchor>a5e8a38af13069a0cc3fff9aae26892e4</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>elements</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1amberprmtopfile_1_1AmberPrmtopFile.html</anchorfile>
      <anchor>aa9aaa650bacb9b91c82437c2ce48f50c</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::charmmcrdfiles::CharmmCrdFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>atomno</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>a030eb8cc6599f4d5e9fb2cde4d29d938</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>resno</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>a01083bae7383c64c3186f3d5106912bd</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>resname</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>a8e21762337e33bac91e16bba46667871</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>resid</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>ad77f797ff2998e7d895c2899db143e90</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>attype</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>ac9a921f086a500b268653b0af92ef2eb</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>positions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>ac17d0e3d420545b0cbe7c718cf026ddc</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>title</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>a051e403214cb6872ad3fe4e50302a6ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>segid</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>a4c97334ee1ffa6012b566a468a09981a</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>weighting</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>a0973e45447789a2d9fbf2e87b33f2ae9</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>natom</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmCrdFile.html</anchorfile>
      <anchor>a27dd74db90774bfbbd4ed72ae89229a6</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::charmmcrdfiles::CharmmRstFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>printcoords</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>a3e28151fd9e7c58f951e480c31d98a01</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>header</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>ae8f626807b2dddc1872b3005556939cd</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>title</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>a051e403214cb6872ad3fe4e50302a6ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>enrgstat</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>a8adde09b56003d5754bf1c282891ea57</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>positionsold</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>aa1e71b7e8fec6184ff2d93ec745039c8</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>positions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>ac17d0e3d420545b0cbe7c718cf026ddc</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>velocities</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>a14f7d6bd0bbeb4ecfdb5ef44ca0d1d3b</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>ff_version</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>aac3c6646eb8f694231a857fd053d64b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>natom</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>a27dd74db90774bfbbd4ed72ae89229a6</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>npriv</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>a34bc5e35d8878e06f53e0b2bfa861f7e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>nstep</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>adfaad771c2d636eec6ac27f95f256e1a</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>nsavc</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>abc87b2c16be4a8ded5a10178fe12c03c</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>nsavv</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>a1e977b6f08f4a2f9cfc97eaae4b7eaa5</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>jhstrt</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmcrdfiles_1_1CharmmRstFile.html</anchorfile>
      <anchor>a1b96af5d9ce3421584cf442a50f15def</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::charmmparameterset::CharmmParameterSet</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>loadSet</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>a92584d522d16c6b14f51a978daacf82e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>readParameterFile</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>a814c4a3f4ce325eda0303ff7e336f935</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>readTopologyFile</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>afc4cf889d3dafa3b4eea609d3ed3b979</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>readStreamFile</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>a21342a240e9aebc54d9b03bb3f889fc9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>condense</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>a579e32bf63ea45c6a8a739ab69f09daa</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>atom_types_str</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>ada9f85a239b8311dfe1b5784180fca6b</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>atom_types_int</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>abfdbe43686901a1827f3751231a54697</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>atom_types_tuple</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>af39861b33ecae4ab6ee4af9d836c53ab</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>bond_types</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>af18d87b416514f6399732e2696db7262</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>angle_types</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>af6dac1a264add8ade5aa0f071809f62a</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>urey_bradley_types</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>ad939f8a91adc185f80c300cce3e0a4a8</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>dihedral_types</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>a90ebc3bcc753abf4f429efe006840c54</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>improper_types</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>ac6ce93f7f8d18411cf44f6f2ab5c87a9</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>cmap_types</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>ac3cc8f031782deac20ec51c537925b50</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>nbfix_types</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>ac2116e4ea6cc9902c62d343ebc5f9971</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>parametersets</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmparameterset_1_1CharmmParameterSet.html</anchorfile>
      <anchor>a925a271cef2ebfc0b5d9769298ff5348</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::charmmpsffile::CharmmPsfFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>writePsf</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a13c2b4cb4bead60008d9a1f7a0461d8e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>loadParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a0351facf08bffc704b7f5205a1547bdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setBox</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>aaa4a6362651714fdbf4eb1ee162ff648</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>topology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a8e972c5a289eb2f5fce8a9b1f8e0268f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createSystem</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a04c2b6fd2a8d956129b2be4517534cc7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>system</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>ae926cc6b6ecd778106914f53e7f7cac3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>boxLengths</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a95f5ef9de772cc7ab287295c57994fac</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>boxLengths</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a95f5ef9de772cc7ab287295c57994fac</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>boxVectors</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a81974f73b538a7f9caf4b4150f9bea2a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>boxVectors</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a81974f73b538a7f9caf4b4150f9bea2a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>deleteCmap</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a7f94f9b8579aa4b04995d25ca0682d39</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>residue_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a1f1bca0106c8c67e95de7416e3ce6a4d</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>atom_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>af64600922c86312cd849794a2efd5bbf</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>bond_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>ac14a5476f11d5b8b0ce73268cf56a32c</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>angle_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a07480895280a719f5156cb91b66f9d68</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>dihedral_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a4f2ad3e114fc85bab80a90765fb4d0f4</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>dihedral_parameter_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a3baa08b2748dc798e04f314dbd11418e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>improper_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a50142c1f0c0947c3b7c520ec4f34152e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>cmap_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>ab03be6cf00228a6adc282e723c8a43db</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>donor_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a8a735cda5521a394528eac6ed20d6df5</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>acceptor_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>abb6f8d65b2a0d410a6287016ffbe06e7</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>group_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a6b837c4620163af269109697eb916807</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>title</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a051e403214cb6872ad3fe4e50302a6ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>flags</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>ab6b306ef981f5e21bb41ea2c2dbe8cd9</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>box_vectors</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a8da927bb25b56d32628cf4f0bc72f480</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>urey_bradley_list</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a37af247010beef2937068e3c5afff98f</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type>int</type>
      <name>BOND_FORCE_GROUP</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a33b6cece6bfc37598968c576d683878b</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type>int</type>
      <name>ANGLE_FORCE_GROUP</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a225722fc97376a276da044dc7b1c64d0</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type>int</type>
      <name>DIHEDRAL_FORCE_GROUP</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a5071d0acd7b7ac60e4b06e3ee47490de</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type>int</type>
      <name>UREY_BRADLEY_FORCE_GROUP</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>aaed331a1967933ebc43afa9d50202f6e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type>int</type>
      <name>IMPROPER_FORCE_GROUP</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a235891217aa2c59f30f1dc44a1cb9269</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type>int</type>
      <name>CMAP_FORCE_GROUP</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>af11b8a2b0221eca6b83c5b31c098f6bc</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type>int</type>
      <name>NONBONDED_FORCE_GROUP</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>a4eec88d072c5218ef78dd20702fe495b</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type>int</type>
      <name>GB_FORCE_GROUP</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1charmmpsffile_1_1CharmmPsfFile.html</anchorfile>
      <anchor>ada856086b1664580a3ae031caba1cbe1</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::checkpointreporter::CheckpointReporter</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1checkpointreporter_1_1CheckpointReporter.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1checkpointreporter_1_1CheckpointReporter.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>describeNextReport</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1checkpointreporter_1_1CheckpointReporter.html</anchorfile>
      <anchor>a03ede6a90f27c26feb14b9c273f01d42</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>report</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1checkpointreporter_1_1CheckpointReporter.html</anchorfile>
      <anchor>a8e93cee2e05d6ac689c97ad197510fe0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1checkpointreporter_1_1CheckpointReporter.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::dcdfile::DCDFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1dcdfile_1_1DCDFile.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1dcdfile_1_1DCDFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>writeModel</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1dcdfile_1_1DCDFile.html</anchorfile>
      <anchor>aea04c83fa48c1572b549ed0f5ae81644</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::dcdreporter::DCDReporter</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1dcdreporter_1_1DCDReporter.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1dcdreporter_1_1DCDReporter.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>describeNextReport</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1dcdreporter_1_1DCDReporter.html</anchorfile>
      <anchor>a03ede6a90f27c26feb14b9c273f01d42</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>report</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1dcdreporter_1_1DCDReporter.html</anchorfile>
      <anchor>a8e93cee2e05d6ac689c97ad197510fe0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1dcdreporter_1_1DCDReporter.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::desmonddmsfile::DesmondDMSFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1desmonddmsfile_1_1DesmondDMSFile.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1desmonddmsfile_1_1DesmondDMSFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1desmonddmsfile_1_1DesmondDMSFile.html</anchorfile>
      <anchor>a97b90d5998ed9203e18087203e3eef2a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTopology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1desmonddmsfile_1_1DesmondDMSFile.html</anchorfile>
      <anchor>a6bbbabdcb078f5feb40e195428ee93ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getProvenance</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1desmonddmsfile_1_1DesmondDMSFile.html</anchorfile>
      <anchor>ac610aaa19e970e500b4b0a4f48be6fbc</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createSystem</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1desmonddmsfile_1_1DesmondDMSFile.html</anchorfile>
      <anchor>a04c2b6fd2a8d956129b2be4517534cc7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>close</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1desmonddmsfile_1_1DesmondDMSFile.html</anchorfile>
      <anchor>a9a957c03c6873d8a14c39f87c9b24f54</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1desmonddmsfile_1_1DesmondDMSFile.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>provenance</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1desmonddmsfile_1_1DesmondDMSFile.html</anchorfile>
      <anchor>a162a82eddf6c50065ce9f18ea8035b64</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>positions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1desmonddmsfile_1_1DesmondDMSFile.html</anchorfile>
      <anchor>ac17d0e3d420545b0cbe7c718cf026ddc</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::element::Element</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getBySymbol</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</anchorfile>
      <anchor>a8049aa48b7ec2ccb63372ce90ff27a36</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getByAtomicNumber</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</anchorfile>
      <anchor>a1a79a47f379f6be99782477aa3f33da8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getByMass</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</anchorfile>
      <anchor>a87e56756caca3b1260dbde4e96683bfa</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>atomic_number</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</anchorfile>
      <anchor>a54d0b85b015fb0d8293152e573dbd1c3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>name</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</anchorfile>
      <anchor>a757840459670ee7692e00cf5ddc722d5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>symbol</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</anchorfile>
      <anchor>a312c55479750c2b9660e9d3c394caf27</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>mass</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</anchorfile>
      <anchor>a61d33e6f27254204d6ac345609aa122e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__str__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</anchorfile>
      <anchor>aa7a4b9bc0941308e362738503137460e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1element_1_1Element.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::forcefield::NoCutoff</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1NoCutoff.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1NoCutoff.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::forcefield::CutoffNonPeriodic</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1CutoffNonPeriodic.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1CutoffNonPeriodic.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::forcefield::CutoffPeriodic</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1CutoffPeriodic.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1CutoffPeriodic.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::forcefield::Ewald</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1Ewald.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1Ewald.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::forcefield::PME</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1PME.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1PME.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::forcefield::HBonds</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1HBonds.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1HBonds.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::forcefield::AllBonds</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1AllBonds.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1AllBonds.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::forcefield::HAngles</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1HAngles.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__repr__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1HAngles.html</anchorfile>
      <anchor>ad8b9328939df072e4740cd9a63189744</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::forcefield::ForceField</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1ForceField.html</filename>
    <class kind="class">simtk::openmm::app::forcefield::ForceField::_BondData</class>
    <class kind="class">simtk::openmm::app::forcefield::ForceField::_SystemData</class>
    <class kind="class">simtk::openmm::app::forcefield::ForceField::_TemplateAtomData</class>
    <class kind="class">simtk::openmm::app::forcefield::ForceField::_TemplateData</class>
    <class kind="class">simtk::openmm::app::forcefield::ForceField::_VirtualSiteData</class>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1ForceField.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>loadFile</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1ForceField.html</anchorfile>
      <anchor>a73b868dfe49799c6859e71b70e2544f1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGenerators</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1ForceField.html</anchorfile>
      <anchor>a19b3ceb92ab6bf40da9d4d1117d4be8f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>registerGenerator</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1ForceField.html</anchorfile>
      <anchor>a82280136e55e68bfd40b395751ce58d3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>registerAtomType</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1ForceField.html</anchorfile>
      <anchor>a38b1a97e3ec825db0939238e03226694</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>registerResidueTemplate</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1ForceField.html</anchorfile>
      <anchor>aeeafc8ad3309f7cc1d5245f7adc906af</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>registerScript</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1ForceField.html</anchorfile>
      <anchor>a47f4622763ceea0198ee159a677e0677</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createSystem</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1forcefield_1_1ForceField.html</anchorfile>
      <anchor>a04c2b6fd2a8d956129b2be4517534cc7</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::gromacsgrofile::GromacsGroFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1gromacsgrofile_1_1GromacsGroFile.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacsgrofile_1_1GromacsGroFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumFrames</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacsgrofile_1_1GromacsGroFile.html</anchorfile>
      <anchor>a2c8f3615a51f62a0477828ce38ba61b5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacsgrofile_1_1GromacsGroFile.html</anchorfile>
      <anchor>a97b90d5998ed9203e18087203e3eef2a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getUnitCellDimensions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacsgrofile_1_1GromacsGroFile.html</anchorfile>
      <anchor>afce5a1696ce998b549d33a5e1be469a2</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>positions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacsgrofile_1_1GromacsGroFile.html</anchorfile>
      <anchor>ac17d0e3d420545b0cbe7c718cf026ddc</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>elements</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacsgrofile_1_1GromacsGroFile.html</anchorfile>
      <anchor>aa9aaa650bacb9b91c82437c2ce48f50c</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>atomNames</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacsgrofile_1_1GromacsGroFile.html</anchorfile>
      <anchor>ab632e8b6fec8c7b9eb716110b7268ea9</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>residueIds</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacsgrofile_1_1GromacsGroFile.html</anchorfile>
      <anchor>a889d8b08fb86e84ac81d8728aeb604e4</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>residueNames</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacsgrofile_1_1GromacsGroFile.html</anchorfile>
      <anchor>a90e6f277aaf6dab11c49ddd6097bf012</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::gromacstopfile::GromacsTopFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1gromacstopfile_1_1GromacsTopFile.html</filename>
    <class kind="class">simtk::openmm::app::gromacstopfile::GromacsTopFile::_MoleculeType</class>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacstopfile_1_1GromacsTopFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createSystem</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacstopfile_1_1GromacsTopFile.html</anchorfile>
      <anchor>a04c2b6fd2a8d956129b2be4517534cc7</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>topology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1gromacstopfile_1_1GromacsTopFile.html</anchorfile>
      <anchor>a5e8a38af13069a0cc3fff9aae26892e4</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::modeller::Modeller</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</filename>
    <class kind="class">simtk::openmm::app::modeller::Modeller::_Hydrogen</class>
    <class kind="class">simtk::openmm::app::modeller::Modeller::_ResidueData</class>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTopology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>a6bbbabdcb078f5feb40e195428ee93ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>a97b90d5998ed9203e18087203e3eef2a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>add</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>a66aa7c8063db6217a0a0061f8b7ba206</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>delete</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>ab48bde70a0927a83d62464cb0627c34b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>deleteWater</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>acb8683faf05f3bad2e7fd3985bf64963</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>convertWater</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>a6378af56ae75acce07d8a2f08f8cf87c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addSolvent</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>ad489382394ab7f160e007ed890179435</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>loadHydrogenDefinitions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>a4d38bb19ab89760311eb99247c214948</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addHydrogens</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>ab19e4d48d3e7a317038fa32b82702ba6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addExtraParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>ad59ef5b703f4dd7511858aa5d0be359d</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>topology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>a5e8a38af13069a0cc3fff9aae26892e4</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>positions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1modeller_1_1Modeller.html</anchorfile>
      <anchor>ac17d0e3d420545b0cbe7c718cf026ddc</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::pdbfile::PDBFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTopology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</anchorfile>
      <anchor>a6bbbabdcb078f5feb40e195428ee93ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumFrames</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</anchorfile>
      <anchor>a2c8f3615a51f62a0477828ce38ba61b5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</anchorfile>
      <anchor>a97b90d5998ed9203e18087203e3eef2a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>writeFile</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</anchorfile>
      <anchor>aa3b3a5848df522615fb8bb4d2341c083</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>writeHeader</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</anchorfile>
      <anchor>af2f891a4fc2098c8b23bdaeb6171005e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>writeModel</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</anchorfile>
      <anchor>aea04c83fa48c1572b549ed0f5ae81644</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>writeFooter</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</anchorfile>
      <anchor>aeeb21215afdeeed6dace697853c0195b</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>topology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</anchorfile>
      <anchor>a5e8a38af13069a0cc3fff9aae26892e4</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>positions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbfile_1_1PDBFile.html</anchorfile>
      <anchor>ac17d0e3d420545b0cbe7c718cf026ddc</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::pdbreporter::PDBReporter</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1pdbreporter_1_1PDBReporter.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbreporter_1_1PDBReporter.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>describeNextReport</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbreporter_1_1PDBReporter.html</anchorfile>
      <anchor>a03ede6a90f27c26feb14b9c273f01d42</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>report</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbreporter_1_1PDBReporter.html</anchorfile>
      <anchor>a8e93cee2e05d6ac689c97ad197510fe0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbreporter_1_1PDBReporter.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::pdbxfile::PDBxFile</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1pdbxfile_1_1PDBxFile.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbxfile_1_1PDBxFile.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTopology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbxfile_1_1PDBxFile.html</anchorfile>
      <anchor>a6bbbabdcb078f5feb40e195428ee93ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumFrames</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbxfile_1_1PDBxFile.html</anchorfile>
      <anchor>a2c8f3615a51f62a0477828ce38ba61b5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbxfile_1_1PDBxFile.html</anchorfile>
      <anchor>a97b90d5998ed9203e18087203e3eef2a</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>topology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbxfile_1_1PDBxFile.html</anchorfile>
      <anchor>a5e8a38af13069a0cc3fff9aae26892e4</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>positions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1pdbxfile_1_1PDBxFile.html</anchorfile>
      <anchor>ac17d0e3d420545b0cbe7c718cf026ddc</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::simulation::Simulation</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1simulation_1_1Simulation.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1simulation_1_1Simulation.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>minimizeEnergy</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1simulation_1_1Simulation.html</anchorfile>
      <anchor>a4d47fc79974b2bfc21c56a9c24029863</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1simulation_1_1Simulation.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>topology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1simulation_1_1Simulation.html</anchorfile>
      <anchor>a5e8a38af13069a0cc3fff9aae26892e4</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>system</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1simulation_1_1Simulation.html</anchorfile>
      <anchor>ac4ca86dead4518ac4fd6e30172db3d9e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>integrator</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1simulation_1_1Simulation.html</anchorfile>
      <anchor>ab1cec8fcf3d8a6831c838d4e1688b323</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>currentStep</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1simulation_1_1Simulation.html</anchorfile>
      <anchor>a8f43312e87c9d1d79abb5479fe6865d6</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>reporters</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1simulation_1_1Simulation.html</anchorfile>
      <anchor>a61f628296d1d420b38b4faa49cb0644c</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>context</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1simulation_1_1Simulation.html</anchorfile>
      <anchor>a261f9f58ccbeaa962c4e675e4212c9cc</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::statedatareporter::StateDataReporter</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1statedatareporter_1_1StateDataReporter.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1statedatareporter_1_1StateDataReporter.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>describeNextReport</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1statedatareporter_1_1StateDataReporter.html</anchorfile>
      <anchor>a03ede6a90f27c26feb14b9c273f01d42</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>report</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1statedatareporter_1_1StateDataReporter.html</anchorfile>
      <anchor>a8e93cee2e05d6ac689c97ad197510fe0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1statedatareporter_1_1StateDataReporter.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::topology::Topology</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addChain</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>a148506de1b4e039f6031b1fdfbc5ee99</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addResidue</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>a74ea7c8bc42a4e3b603ec30d6f6822b0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addAtom</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>a284a412d4aaf4be386c78a65280c44f7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addBond</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>a5f2e2dae6e580fba313601c9cf0e09df</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>chains</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>a46360cca7c929b45628f7dcef647590e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>residues</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>a2af53ce00d71711b2993f2a429df313e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>atoms</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>aa06eb0a5c7b323a3fb7bff13bfe777f9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>bonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>a69311df98c18150f182467c0ab56113e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getUnitCellDimensions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>afce5a1696ce998b549d33a5e1be469a2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setUnitCellDimensions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>aba227db707edbe4eeb5f9532cf84fcd7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>loadBondDefinitions</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>aa9d88e48916464efbc7a51e21abe5ad8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createStandardBonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>af89a4750f693785d39204ea53844f247</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createDisulfideBonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Topology.html</anchorfile>
      <anchor>a90eca0ec61d204cdb3e944ceb2a756ca</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::topology::Chain</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1topology_1_1Chain.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Chain.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>residues</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Chain.html</anchorfile>
      <anchor>a2af53ce00d71711b2993f2a429df313e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>atoms</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Chain.html</anchorfile>
      <anchor>aa06eb0a5c7b323a3fb7bff13bfe777f9</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>index</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Chain.html</anchorfile>
      <anchor>a6784e1c334dfceb8f017667c0b0f6a3e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>topology</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Chain.html</anchorfile>
      <anchor>a5e8a38af13069a0cc3fff9aae26892e4</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::topology::Residue</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1topology_1_1Residue.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Residue.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>atoms</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Residue.html</anchorfile>
      <anchor>aa06eb0a5c7b323a3fb7bff13bfe777f9</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>name</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Residue.html</anchorfile>
      <anchor>ab74e6bf80237ddc4109968cedc58c151</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>index</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Residue.html</anchorfile>
      <anchor>a6784e1c334dfceb8f017667c0b0f6a3e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>chain</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Residue.html</anchorfile>
      <anchor>a8d4ea1c68a9d6a205e71a9daaf06e5e3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::app::topology::Atom</name>
    <filename>classsimtk_1_1openmm_1_1app_1_1topology_1_1Atom.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Atom.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>name</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Atom.html</anchorfile>
      <anchor>ab74e6bf80237ddc4109968cedc58c151</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>element</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Atom.html</anchorfile>
      <anchor>aa94081298ab2dfd0f261cce6c203d9aa</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>index</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Atom.html</anchorfile>
      <anchor>a6784e1c334dfceb8f017667c0b0f6a3e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>residue</name>
      <anchorfile>classsimtk_1_1openmm_1_1app_1_1topology_1_1Atom.html</anchorfile>
      <anchor>af33bdebf10aee4ac281160cb767df22b</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::State</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1State.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__getstate__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>a8a97f085cdc730415d3a782b40a3c31e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__setstate__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>a2157e3c1b2bcbbc208f96575e0b2029f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTime</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>a0ea4c56d978697da742e3dff1854e71f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPeriodicBoxVectors</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>a95cfa9cf956f88798c1e6a06a1f95e74</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPeriodicBoxVolume</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>ab57ce8d17743ab8af763625858c04531</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>a97b90d5998ed9203e18087203e3eef2a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getVelocities</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>a97a2fb63e04d83fcc415dc877c2fb8bf</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getForces</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>abcd1e61448fc5cca5fb2ddc20c7eaf98</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getKineticEnergy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>a9a3a03a07a250e0bf428c6c3a681e10e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPotentialEnergy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>acd256f9d490f46eae34643158bca54d2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1State.html</anchorfile>
      <anchor>a69f7871c9e162cbeddc4c535e2330ea9</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::Force</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1Force.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Force.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Force.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getForceGroup</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Force.html</anchorfile>
      <anchor>a1a11a4ce8bdd7716f196cc7fab6bcf73</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setForceGroup</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Force.html</anchorfile>
      <anchor>aaaa2c6d5a0191ec2728ab2f77568f136</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__copy__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Force.html</anchorfile>
      <anchor>aff7eb85af9364012dd2356f495fd1c7f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__deepcopy__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Force.html</anchorfile>
      <anchor>a0fc7f009b31b1a6b05d4d3d97993c437</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CustomAngleForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumAngles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a7596f5aa2bbdf397ea357f6a5aa91e92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerAngleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>ab9facc6d0f7a7eaf0641de2b0d25d141</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumGlobalParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>ab6e417977b8893082640bd0ffc321ecb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>ae954cd79c684f8ace526aa071f2b8721</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a21767f43295ba0214f854b70523d5e3a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerAngleParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>afa448966a9c7594e6f854e4b635fb2a7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerAngleParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a6d93462d2a30db29e2c775a917eee063</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerAngleParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a124f877184f95d65b055feac2ab7f181</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addGlobalParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a61d5653e19d3420c470f0f60461f10c9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>aaf7b7b2c024d5d00906f9d578713a8ca</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a449a42e4f4e9f90fd99df8d9d5cbc569</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a9cc836114ee4573aa1216bf48a2464b0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a02828d31e7f17877672a1f4abdf70488</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addAngle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>ab5a5dbc348deff447b1a126969c565aa</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAngleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a449ce8356478bf641cead889395afe05</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAngleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a3bf461547d7580a5c1e83281268428b9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomAngleForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CustomExternalForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a343ee5e4d8090f1d6a1beb7552ddf85a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumGlobalParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>ab6e417977b8893082640bd0ffc321ecb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>ae954cd79c684f8ace526aa071f2b8721</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a21767f43295ba0214f854b70523d5e3a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerParticleParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>abd12bb8bffb3a4c7af289a860d616bc4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerParticleParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a896c31a0798152d0938fa6d1b169b1f1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerParticleParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a4add3e5537dfcac75789a2376ca07fed</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addGlobalParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a61d5653e19d3420c470f0f60461f10c9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>aaf7b7b2c024d5d00906f9d578713a8ca</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a449a42e4f4e9f90fd99df8d9d5cbc569</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a9cc836114ee4573aa1216bf48a2464b0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a02828d31e7f17877672a1f4abdf70488</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomExternalForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AndersenThermostat</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>Temperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>a22ce76a856e10039392b73867617b7d8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>CollisionFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>ac0987541bfddd43b7bd9036ad01fa5fa</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDefaultTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>a396be4b03b9311ddc394bc4af0e9d37c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDefaultTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>ae08d933a82ed57118ee61c7dc1838038</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDefaultCollisionFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>a541c26e4e7e5755384e7b98381552bcd</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDefaultCollisionFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>a9e6a3caa65fa8fa8598d0bc2dd2e16ad</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>ae3ad838743b5f0411cb4ca9a256e7cdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>a0004198be7d9f61149a45b4dd69e00c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AndersenThermostat.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaBondForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumBonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>abdbbad43fdfbbed3f94e692fb9408309</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalBondCubic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>a9453154928fbdf44d241a6b855693f0a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalBondCubic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>a85385ad310a64271a8e394fb856e0334</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalBondQuartic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>a782f148366890f3cb37eacf29d4324d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalBondQuartic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>ab48ade4c5548c999cbaaa0a020689deb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addBond</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>a5f2e2dae6e580fba313601c9cf0e09df</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>a4d042cfc2c3496159510135c6ac72df7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>a78798b222e67ec92255a856a3f51bb31</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaBondForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaInPlaneAngleForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumAngles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a7596f5aa2bbdf397ea357f6a5aa91e92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalInPlaneAngleCubic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a77e922513d849d162e07b1aa31c0a3d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalInPlaneAngleCubic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a4c4038f95babeacc550d65b9f3534f21</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalInPlaneAngleQuartic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a17f153b8fc5276583c617389e9398357</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalInPlaneAngleQuartic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a8ebb97862ef81c988092236765493928</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalInPlaneAnglePentic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a2955e49f829ac5562f371e9fe70575bf</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalInPlaneAnglePentic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a702e19564678680b90bbbe7b7055df9b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalInPlaneAngleSextic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a0cd317127240fb7fdb848dd3a656e1a5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalInPlaneAngleSextic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>acf6e61c337f9afd5bf422eb5ce4e1f07</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addAngle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>ab5a5dbc348deff447b1a126969c565aa</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAngleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a449ce8356478bf641cead889395afe05</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAngleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a3bf461547d7580a5c1e83281268428b9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaInPlaneAngleForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::HarmonicBondForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1HarmonicBondForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumBonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicBondForce.html</anchorfile>
      <anchor>abdbbad43fdfbbed3f94e692fb9408309</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addBond</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicBondForce.html</anchorfile>
      <anchor>a5f2e2dae6e580fba313601c9cf0e09df</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicBondForce.html</anchorfile>
      <anchor>a4d042cfc2c3496159510135c6ac72df7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicBondForce.html</anchorfile>
      <anchor>a78798b222e67ec92255a856a3f51bb31</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicBondForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicBondForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicBondForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicBondForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CustomTorsionForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumTorsions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a2a656f1b15e1baea82874850697d231f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>ab7564e4f4ed429dda82c91536f444d9e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumGlobalParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>ab6e417977b8893082640bd0ffc321ecb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>ae954cd79c684f8ace526aa071f2b8721</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a21767f43295ba0214f854b70523d5e3a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerTorsionParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>aa4bbd4d525885db0dc1570e383b21427</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerTorsionParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a63ac34bfebc8683fc41a0052eac41220</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerTorsionParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a00c9367b18e8c8a6ce4beed43cd9d55d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addGlobalParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a61d5653e19d3420c470f0f60461f10c9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>aaf7b7b2c024d5d00906f9d578713a8ca</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a449a42e4f4e9f90fd99df8d9d5cbc569</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a9cc836114ee4573aa1216bf48a2464b0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a02828d31e7f17877672a1f4abdf70488</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addTorsion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a3a9735aaf81abdeee86dd0b3f6c942e7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a330447f62090baae75b0839b0a9aee2d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>ab174b16770b205e2e7d5375a478460ec</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomTorsionForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::MonteCarloAnisotropicBarostat</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>PressureX</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>a637f6e13aabdf8ff3f92f88a00ee1ec7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>PressureY</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>aa1a81bb8ad95cf3b52f69410e37482d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>PressureZ</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>ae5fcffc60b08d476854c7882df81ad54</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDefaultPressure</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>a95954ff7b1790fe98c029aae3c242035</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDefaultPressure</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>a399e4ab33c9e560b201e9ee20af5f05b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getScaleX</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>afefd1b6ed464aed3160e307781c38cbc</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getScaleY</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>a794c5aa0693e9ab690c196c4b1cd17fe</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getScaleZ</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>a13860bb36193863c05195dbdf8e4fb6c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>ae9b10d3a445707358af098a79308080a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>a1dc3176a11fd56a46fc4c48689b027a2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>a8ff51c967695d54b67dbff4625dc7e2b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>a8ed5bdb11500567a259a422de0c7f11f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>ae3ad838743b5f0411cb4ca9a256e7cdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>a0004198be7d9f61149a45b4dd69e00c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloAnisotropicBarostat.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::TabulatedFunction</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1TabulatedFunction.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1TabulatedFunction.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1TabulatedFunction.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>Copy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1TabulatedFunction.html</anchorfile>
      <anchor>ab4167abc8ce453dc3900becc1ade3a73</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::Discrete3DFunction</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1Discrete3DFunction.html</filename>
    <base>simtk::openmm::openmm::TabulatedFunction</base>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete3DFunction.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete3DFunction.html</anchorfile>
      <anchor>a5fc69a25689250fcde6f0cdc14117a70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete3DFunction.html</anchorfile>
      <anchor>a65153062c8c10cc34d445914d2442bde</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>Copy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete3DFunction.html</anchorfile>
      <anchor>ab4167abc8ce453dc3900becc1ade3a73</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete3DFunction.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete3DFunction.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::RBTorsionForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1RBTorsionForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumTorsions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RBTorsionForce.html</anchorfile>
      <anchor>a2a656f1b15e1baea82874850697d231f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addTorsion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RBTorsionForce.html</anchorfile>
      <anchor>a3a9735aaf81abdeee86dd0b3f6c942e7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RBTorsionForce.html</anchorfile>
      <anchor>a330447f62090baae75b0839b0a9aee2d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RBTorsionForce.html</anchorfile>
      <anchor>ab174b16770b205e2e7d5375a478460ec</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RBTorsionForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RBTorsionForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RBTorsionForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RBTorsionForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaGeneralizedKirkwoodForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSolventDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a92f0c5b043c6e73043cbc712e9123c2d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSolventDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a559c0fd23afa63f3c1922424eb909243</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSoluteDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a8de7f9411480311debeaceae13985f1a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSoluteDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a82d6e3286a890d91dad98b4eee83eb5c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getIncludeCavityTerm</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a507b40fbc768193f2c57e9ef441964e9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setIncludeCavityTerm</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>aae74c0363e43faa87edfeb608d2097fd</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getProbeRadius</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a63959a2fba8f5cc5cb41dcc6b1a59fa9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setProbeRadius</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a4e85dc5724ca3b6c18d0c07dc346c791</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSurfaceAreaFactor</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>aea1d8baa7d742d2282cf39460cdfa8a5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSurfaceAreaFactor</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a12e7bf908243fd19d473e0fc36ec410c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaGeneralizedKirkwoodForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::Continuous3DFunction</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1Continuous3DFunction.html</filename>
    <base>simtk::openmm::openmm::TabulatedFunction</base>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous3DFunction.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous3DFunction.html</anchorfile>
      <anchor>a5fc69a25689250fcde6f0cdc14117a70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous3DFunction.html</anchorfile>
      <anchor>a65153062c8c10cc34d445914d2442bde</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>Copy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous3DFunction.html</anchorfile>
      <anchor>ab4167abc8ce453dc3900becc1ade3a73</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous3DFunction.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous3DFunction.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::Integrator</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getStepSize</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</anchorfile>
      <anchor>afd9b168377a8e392b98f73be4d57fdb3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setStepSize</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</anchorfile>
      <anchor>a7d7ccc5925146349c49d74989f1a1a3b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getConstraintTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</anchorfile>
      <anchor>a0884cf616c6cb072b25e00000b9fdeb0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setConstraintTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</anchorfile>
      <anchor>a311f37a6d317055063bd8b390ba47737</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__getstate__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</anchorfile>
      <anchor>a8a97f085cdc730415d3a782b40a3c31e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__setstate__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</anchorfile>
      <anchor>a2157e3c1b2bcbbc208f96575e0b2029f</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Integrator.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::DrudeLangevinIntegrator</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</filename>
    <base>simtk::openmm::openmm::Integrator</base>
    <member kind="function">
      <type>def</type>
      <name>getTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>a8ff51c967695d54b67dbff4625dc7e2b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>a8ed5bdb11500567a259a422de0c7f11f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>ac00749874fd533e33e8a35903ac6b7c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>ac5290bdbea8bc4d829b8dd87687706a0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDrudeTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>ac6f633bd9eed76f3ddc316a5d8062773</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDrudeTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>a804b39250ae5dd46e93787154dca81cc</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDrudeFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>ab2571ba393b1ea94e7b0ac58097bbf75</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDrudeFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>abc112d39aec93879e7e43c0aef67f7eb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>ae3ad838743b5f0411cb4ca9a256e7cdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>a0004198be7d9f61149a45b4dd69e00c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeLangevinIntegrator.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::VariableVerletIntegrator</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1VariableVerletIntegrator.html</filename>
    <base>simtk::openmm::openmm::Integrator</base>
    <member kind="function">
      <type>def</type>
      <name>getErrorTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableVerletIntegrator.html</anchorfile>
      <anchor>ad797b61e5f1b52097ceabd3213c9774a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setErrorTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableVerletIntegrator.html</anchorfile>
      <anchor>a37a51eceb5a29dfba0fbb2c60915fea6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableVerletIntegrator.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>stepTo</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableVerletIntegrator.html</anchorfile>
      <anchor>a77adbc9b597ef7dbfccc1a37739e078e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableVerletIntegrator.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableVerletIntegrator.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableVerletIntegrator.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaTorsionTorsionForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumTorsionTorsions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</anchorfile>
      <anchor>a616b9ac445f7036ee9aeb29b3651f761</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumTorsionTorsionGrids</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</anchorfile>
      <anchor>aa2ed86b697d458e371362a904f91acc9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addTorsionTorsion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</anchorfile>
      <anchor>aa6c5f158e3b57ec7107dec4afad500c1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTorsionTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</anchorfile>
      <anchor>ad4b8e8c829bc70055b31add6eb1eb1b5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTorsionTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</anchorfile>
      <anchor>a7bc018d2e9abd803056406ca875999e7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTorsionTorsionGrid</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</anchorfile>
      <anchor>add97cdfa6a6f5b9e59a08241d8d79658</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTorsionTorsionGrid</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</anchorfile>
      <anchor>aa3195523de6a23d831c67ea084c7afff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaTorsionTorsionForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::PeriodicTorsionForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1PeriodicTorsionForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumTorsions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1PeriodicTorsionForce.html</anchorfile>
      <anchor>a2a656f1b15e1baea82874850697d231f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addTorsion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1PeriodicTorsionForce.html</anchorfile>
      <anchor>a3a9735aaf81abdeee86dd0b3f6c942e7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1PeriodicTorsionForce.html</anchorfile>
      <anchor>a330447f62090baae75b0839b0a9aee2d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1PeriodicTorsionForce.html</anchorfile>
      <anchor>ab174b16770b205e2e7d5375a478460ec</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1PeriodicTorsionForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1PeriodicTorsionForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1PeriodicTorsionForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1PeriodicTorsionForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::VirtualSite</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1VirtualSite.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VirtualSite.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VirtualSite.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VirtualSite.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VirtualSite.html</anchorfile>
      <anchor>a3945ebd52fa81166e0c87dd215369fec</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::LocalCoordinatesSite</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1LocalCoordinatesSite.html</filename>
    <base>simtk::openmm::openmm::VirtualSite</base>
    <member kind="function">
      <type>def</type>
      <name>getOriginWeights</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LocalCoordinatesSite.html</anchorfile>
      <anchor>aa4e5270645ea4f077981024b114f2b98</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getXWeights</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LocalCoordinatesSite.html</anchorfile>
      <anchor>a7967f55b18c8f830b9f0184e8dd2a231</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getYWeights</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LocalCoordinatesSite.html</anchorfile>
      <anchor>a60aa7a9ca63fec7b5d4e6ec6af437324</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getLocalPosition</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LocalCoordinatesSite.html</anchorfile>
      <anchor>a017a80ca4172d749e0f812cb4dbedb6c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LocalCoordinatesSite.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LocalCoordinatesSite.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LocalCoordinatesSite.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::Platform</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>registerPlatform</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>a6b445c6f2ee7732c34e896adba5f1bf9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPlatforms</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>ad3fbd273e04baa8bc83781c0489d4d48</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPlatform</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>a15ca6b11f98736f49529eb9526835952</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPlatformByName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>a94d96c1c75698305b3404223f48cd759</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>findPlatform</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>adbcc1d0057afa006b89b28e98d4ac9e1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>loadPluginLibrary</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>afa0995714f1f730078ad8f7d970ba841</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>loadPluginsFromDirectory</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>afd51527437c7557d06bb32521f973c4e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDefaultPluginsDirectory</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>a2f66056baad84dff08b6765cb3cc5c7f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getOpenMMVersion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>ada80e2124c4eb306c5c3ca00b19c38d3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>aa20eb4733f75b094213b8cfd614fa526</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSpeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>a4bfa8d58b9d44c50d1f186da9626dfd7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>supportsDoublePrecision</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>afbc951488845efc71daf62738bfbecfe</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPropertyNames</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>a7a22dc311526e31f441dad45088dcb48</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPropertyValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>a4d9c4fef71e9ac2838bc03f7e601a22c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPropertyValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>ac4fb5143725f07febcdfa01d18ece0ca</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPropertyDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>a7bd7df0839b0e2a979f3d66a5868e37c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPropertyDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>a0dd74e8e8217013a1f5e40b7be0fde1e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>supportsKernels</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Platform.html</anchorfile>
      <anchor>af3d9d172b0f207b3a904cb6c606187e8</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::HarmonicAngleForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1HarmonicAngleForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumAngles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicAngleForce.html</anchorfile>
      <anchor>a7596f5aa2bbdf397ea357f6a5aa91e92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addAngle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicAngleForce.html</anchorfile>
      <anchor>ab5a5dbc348deff447b1a126969c565aa</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAngleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicAngleForce.html</anchorfile>
      <anchor>a449ce8356478bf641cead889395afe05</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAngleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicAngleForce.html</anchorfile>
      <anchor>a3bf461547d7580a5c1e83281268428b9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicAngleForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicAngleForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicAngleForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1HarmonicAngleForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::RPMDIntegrator</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</filename>
    <base>simtk::openmm::openmm::Integrator</base>
    <member kind="function">
      <type>def</type>
      <name>getNumCopies</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>aa62c757328e561dfad32ca1cabb25269</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>a8ff51c967695d54b67dbff4625dc7e2b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>a8ed5bdb11500567a259a422de0c7f11f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>ac00749874fd533e33e8a35903ac6b7c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>ac5290bdbea8bc4d829b8dd87687706a0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getApplyThermostat</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>aba1e3cbfe2bc16dbdd09107c07fc7e8d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setApplyThermostat</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>a76d5cd33102db10c5b9d9989e44522b4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>ae3ad838743b5f0411cb4ca9a256e7cdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>a0004198be7d9f61149a45b4dd69e00c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getContractions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>aab02f28217599c1ed468dd7e21e9370b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>a7ed83dd1feeaf80d40a45e6385f0b646</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setVelocities</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>a2476acb8c0c8b51058e4155bf91fef2c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTotalEnergy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>aedd6a48e454c1bc95e810b11e764d008</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getState</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>a4ce4ebac6ce95bd44e0d8c96d2f7229c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1RPMDIntegrator.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CustomNonbondedForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumExclusions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>ae1875233e15f64a6311212fad403d292</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a343ee5e4d8090f1d6a1beb7552ddf85a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumGlobalParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>ab6e417977b8893082640bd0ffc321ecb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumTabulatedFunctions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a74e18a3775578273d4d097d859d9e4e3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumFunctions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>acaae110738bcfef3694a289a25c1d484</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumInteractionGroups</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a099e2bcdb12c46aca7531dc475e41743</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>ae954cd79c684f8ace526aa071f2b8721</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a21767f43295ba0214f854b70523d5e3a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>aaa7fcfc1cf5dbada21b2991d06ad0e4b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a9dc1c5ecb473d056481adb787a3681d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a38e89ed2475ac54e3d8bb67697847449</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>ac7503abda7bc62bbfa6c234f858af026</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getUseSwitchingFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a2f9f7cc8461b89833f280a7c5e435f96</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setUseSwitchingFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a59baeb8d823a185e0e19a2eb225e6a12</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSwitchingDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a067e2c8647ff7a5fd50aeb9000628728</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSwitchingDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a496146cd96fb6c1d8051cbd019537dd3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getUseLongRangeCorrection</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a291ae50153bbb438eb42b715a52c11c0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setUseLongRangeCorrection</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>af72bf0c67018307cd146ef84188c6330</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerParticleParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>abd12bb8bffb3a4c7af289a860d616bc4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerParticleParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a896c31a0798152d0938fa6d1b169b1f1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerParticleParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a4add3e5537dfcac75789a2376ca07fed</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addGlobalParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a61d5653e19d3420c470f0f60461f10c9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>aaf7b7b2c024d5d00906f9d578713a8ca</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a449a42e4f4e9f90fd99df8d9d5cbc569</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a9cc836114ee4573aa1216bf48a2464b0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a02828d31e7f17877672a1f4abdf70488</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addExclusion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a5f191693e6e5facaf828e4beeb906680</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getExclusionParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>acb5aa17d086246d0a073b7829533bf99</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setExclusionParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a81efa8014ce5376345dfd4e4df38fe34</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createExclusionsFromBonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>ae8573343a1cea4a9a264102c4710a4e7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addTabulatedFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>aa3959c07b124798aa1e6686424993dff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTabulatedFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a80e76629fa2c4acccd413a759683293e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTabulatedFunctionName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a050c9afc3a830ab2783f6fca42bd4c48</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>ad33ba04bab02cea985b7f70b8030c46f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a5fc69a25689250fcde6f0cdc14117a70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a65153062c8c10cc34d445914d2442bde</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addInteractionGroup</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a52b618f1aca0eb4ab8d6df5d24255d1c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getInteractionGroupParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>aa1f522238d290e219c552ac47340c344</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setInteractionGroupParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a2ea40b958d9589b02ddca7224928911d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>aee34d051b028d7b278041e3968e55127</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffNonPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a9a4139e80f5ae78c0b0c7a093bf5b9da</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomNonbondedForce.html</anchorfile>
      <anchor>a4e41ecdcac198d87f89509444bba9968</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::MonteCarloBarostat</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>Pressure</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>ada9d8979f4c1803536581a522f78ff79</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDefaultPressure</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>a95954ff7b1790fe98c029aae3c242035</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDefaultPressure</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>a399e4ab33c9e560b201e9ee20af5f05b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>ae9b10d3a445707358af098a79308080a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>a1dc3176a11fd56a46fc4c48689b027a2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>a8ff51c967695d54b67dbff4625dc7e2b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>a8ed5bdb11500567a259a422de0c7f11f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>ae3ad838743b5f0411cb4ca9a256e7cdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>a0004198be7d9f61149a45b4dd69e00c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloBarostat.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CustomHbondForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumDonors</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a48c6b66f82fd3a25e4b6c09d49f0c958</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumAcceptors</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>ad7d40887a3734a2685af8b291f6ac86a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumExclusions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>ae1875233e15f64a6311212fad403d292</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerDonorParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>ac9b1df6df82569df9cdd872d164c2302</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerAcceptorParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>abfa649dc67e532a8f593f9f0a4eb5b46</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumGlobalParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>ab6e417977b8893082640bd0ffc321ecb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumTabulatedFunctions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a74e18a3775578273d4d097d859d9e4e3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumFunctions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>acaae110738bcfef3694a289a25c1d484</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>ae954cd79c684f8ace526aa071f2b8721</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a21767f43295ba0214f854b70523d5e3a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>aaa7fcfc1cf5dbada21b2991d06ad0e4b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a9dc1c5ecb473d056481adb787a3681d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a38e89ed2475ac54e3d8bb67697847449</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>ac7503abda7bc62bbfa6c234f858af026</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerDonorParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a77c5869509ffbcfbe412e4fbdfa1033c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerDonorParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a8a98ed6e3ec709971587e941fed35138</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerDonorParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a70fc546de2abd92f318deee91a5d3cd3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerAcceptorParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a9c1d2c8eb78927bef07ca1ab9be4ef2b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerAcceptorParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a5be4f9d6ecf7d01ae07def482b1d056d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerAcceptorParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a8c3282b949e37aa765289afa3f3c6fbb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addGlobalParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a61d5653e19d3420c470f0f60461f10c9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>aaf7b7b2c024d5d00906f9d578713a8ca</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a449a42e4f4e9f90fd99df8d9d5cbc569</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a9cc836114ee4573aa1216bf48a2464b0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a02828d31e7f17877672a1f4abdf70488</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addDonor</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a1b7ad8bf82478fb7c1c37824fd0421bb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDonorParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a3765c1de4dbdef1281f567531b832765</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDonorParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a679add829ff595d407f22e1265aac9e4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addAcceptor</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a01bf1ac6ebb87c663c7224c3ccd8d703</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAcceptorParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a711ccd96c8ea86dde0428d07e02f3069</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAcceptorParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a5d3ebb5973c82af88c27c84dd7f93b6a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addExclusion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a5f191693e6e5facaf828e4beeb906680</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getExclusionParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>acb5aa17d086246d0a073b7829533bf99</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setExclusionParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a81efa8014ce5376345dfd4e4df38fe34</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addTabulatedFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>aa3959c07b124798aa1e6686424993dff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTabulatedFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a80e76629fa2c4acccd413a759683293e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTabulatedFunctionName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a050c9afc3a830ab2783f6fca42bd4c48</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>ad33ba04bab02cea985b7f70b8030c46f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a5fc69a25689250fcde6f0cdc14117a70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a65153062c8c10cc34d445914d2442bde</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>aee34d051b028d7b278041e3968e55127</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffNonPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a9a4139e80f5ae78c0b0c7a093bf5b9da</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomHbondForce.html</anchorfile>
      <anchor>a4e41ecdcac198d87f89509444bba9968</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::VariableLangevinIntegrator</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</filename>
    <base>simtk::openmm::openmm::Integrator</base>
    <member kind="function">
      <type>def</type>
      <name>getTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>a8ff51c967695d54b67dbff4625dc7e2b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>a8ed5bdb11500567a259a422de0c7f11f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>ac00749874fd533e33e8a35903ac6b7c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>ac5290bdbea8bc4d829b8dd87687706a0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getErrorTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>ad797b61e5f1b52097ceabd3213c9774a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setErrorTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>a37a51eceb5a29dfba0fbb2c60915fea6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>ae3ad838743b5f0411cb4ca9a256e7cdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>a0004198be7d9f61149a45b4dd69e00c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>stepTo</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>a77adbc9b597ef7dbfccc1a37739e078e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VariableLangevinIntegrator.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::Continuous1DFunction</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1Continuous1DFunction.html</filename>
    <base>simtk::openmm::openmm::TabulatedFunction</base>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous1DFunction.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous1DFunction.html</anchorfile>
      <anchor>a5fc69a25689250fcde6f0cdc14117a70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous1DFunction.html</anchorfile>
      <anchor>a65153062c8c10cc34d445914d2442bde</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>Copy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous1DFunction.html</anchorfile>
      <anchor>ab4167abc8ce453dc3900becc1ade3a73</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous1DFunction.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous1DFunction.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaOutOfPlaneBendForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumOutOfPlaneBends</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>a6152d0571d91c046bdba6673d42a8d23</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalOutOfPlaneBendCubic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>ab29b166fa63edb12f6178465cb2dba96</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalOutOfPlaneBendCubic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>a87a1e1d251227f9a8d51e96a8c4aa4bf</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalOutOfPlaneBendQuartic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>af2df79ac1b97b846bfb5c3c8334363b5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalOutOfPlaneBendQuartic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>a3a9c151e13239d5e2ba7bec0bc3fba74</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalOutOfPlaneBendPentic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>aec88ab71de652825ca39068d8fc6d625</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalOutOfPlaneBendPentic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>a31da6c467fed5411e374e6cc5fd3929d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalOutOfPlaneBendSextic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>a7cfc41078125199bda81c00ace1a8be6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalOutOfPlaneBendSextic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>ad9cda1d9f96a5540ae4b111ae132be36</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addOutOfPlaneBend</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>a616fe5d071fec967b83137992fb991ba</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getOutOfPlaneBendParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>ab27110d306f35aeb47c90b58cd7d1201</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setOutOfPlaneBendParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>a7f1506385c095edead22e3733e74d0fb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaOutOfPlaneBendForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::OpenMMException</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1OpenMMException.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1OpenMMException.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>what</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1OpenMMException.html</anchorfile>
      <anchor>aac8c70d08c9c404fd245251d5fa276de</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1OpenMMException.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1OpenMMException.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::MonteCarloMembraneBarostat</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>Pressure</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>ada9d8979f4c1803536581a522f78ff79</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>SurfaceTension</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>adeb621821798c3c9d27488c4d8ec718b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDefaultPressure</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a95954ff7b1790fe98c029aae3c242035</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDefaultPressure</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a399e4ab33c9e560b201e9ee20af5f05b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDefaultSurfaceTension</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a4c39ac0a9c4f498860ba560bd50a7295</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDefaultSurfaceTension</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a876270585770ea47e16830f2c121e107</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>ae9b10d3a445707358af098a79308080a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a1dc3176a11fd56a46fc4c48689b027a2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a8ff51c967695d54b67dbff4625dc7e2b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a8ed5bdb11500567a259a422de0c7f11f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getXYMode</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a27e93e6555e464ebeed65649b36d53d2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setXYMode</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a40d86365a814fb64fc1440e9818da310</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getZMode</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a6a8b7b4c7e06279fc2d36b380ffa60e3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setZMode</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a97e361196e0229a018d6b24b16fe4ef6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>ae3ad838743b5f0411cb4ca9a256e7cdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a0004198be7d9f61149a45b4dd69e00c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>XYIsotropic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a8c1068905b0bf2dd1ca2801f9bd913ac</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>XYAnisotropic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a5b8617f1104ce38d9210dc1acdfa7dab</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ZFree</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>a9ae515535ce0e0db8577f775363b5e44</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ZFixed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>aff8787a5b0497fe45701e6e556e45f2f</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ConstantVolume</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1MonteCarloMembraneBarostat.html</anchorfile>
      <anchor>aabce7bd5256994685cf720fae54170a9</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::NonbondedForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumExceptions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a8206bc0a119e1710d358c3407519c90f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>aaa7fcfc1cf5dbada21b2991d06ad0e4b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a9dc1c5ecb473d056481adb787a3681d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a38e89ed2475ac54e3d8bb67697847449</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>ac7503abda7bc62bbfa6c234f858af026</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getUseSwitchingFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a2f9f7cc8461b89833f280a7c5e435f96</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setUseSwitchingFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a59baeb8d823a185e0e19a2eb225e6a12</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSwitchingDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a067e2c8647ff7a5fd50aeb9000628728</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSwitchingDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a496146cd96fb6c1d8051cbd019537dd3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getReactionFieldDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>ae7a646da3486a01e94a8b8bda9ab7f71</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setReactionFieldDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>abbb7c7eaf7fe82ee5ea29f6b7c92913b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEwaldErrorTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>afbc5d0cc996f5d6dd5c9a3b02bca3076</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEwaldErrorTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a3b6a666987670f2ead08f8daea20e987</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPMEParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>aba96f13fbf7facae0ba00ade3350affb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPMEParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>acfd19613f05b82cf9df7674b03a4e8fe</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addException</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a3dc17adb466aa2a3a9b96ca93a9c18a0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getExceptionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>adfe08c04b8c8d4ff9fc1cc2a60b91c0f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setExceptionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>aff29fceda29410befbb8f3b1c63b91c7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createExceptionsFromBonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>af4bb6ac4f192c51a2cdaab7f55296c32</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getUseDispersionCorrection</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a5e7f52eb75072be5cf47895eed8fa779</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setUseDispersionCorrection</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>aa705db12b3d8998f8066257d76a060c0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getReciprocalSpaceForceGroup</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a3dfdd66378e7ee940f9121e834fa2113</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setReciprocalSpaceForceGroup</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a436c333ab50ba4a7204e462c813dd9c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle_usingRVdw</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a0b179d1f519c3ec07077e5fb58e6e45e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addException_usingRMin</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>aa53c3bc7c98966e523cec1b1a5744917</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>aee34d051b028d7b278041e3968e55127</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffNonPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a9a4139e80f5ae78c0b0c7a093bf5b9da</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a4e41ecdcac198d87f89509444bba9968</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>Ewald</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>a77933d327012e6d2a0f0fc8267fdb585</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>PME</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1NonbondedForce.html</anchorfile>
      <anchor>acc730434f25bcee3f56dd1f0fe78df61</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::ThreeParticleAverageSite</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1ThreeParticleAverageSite.html</filename>
    <base>simtk::openmm::openmm::VirtualSite</base>
    <member kind="function">
      <type>def</type>
      <name>getWeight</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1ThreeParticleAverageSite.html</anchorfile>
      <anchor>afbdaa386af6e104adb100621218008c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1ThreeParticleAverageSite.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1ThreeParticleAverageSite.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1ThreeParticleAverageSite.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::System</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1System.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleMass</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a824199cdb0a3c63c3316e5b571d2831a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleMass</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a6cbacd6177a379ef9998df36cbff2160</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setVirtualSite</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>ae39815caf900429a960b1b82e5984dd9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>isVirtualSite</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a72273fd9e502d8908a63d378e3360555</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getVirtualSite</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a76ab2f062a8fbd801aced02d5ef12ed3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumConstraints</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a6efcac7119d67ae09f13e02fbcac8445</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addConstraint</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a67a7cb0187af3dcc51cfefdca35d73f4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getConstraintParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a4951f970658d848dc859c351a767818c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setConstraintParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a67d33f7b86354c34cef4555e992b57e1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addForce</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>aeedf55acb1161355875a5d5dd72ee0ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumForces</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a375f9ea7d042b6c0a1948bd27e5080ad</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getForce</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a3ba85855ac441a60352228cf6ce58999</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDefaultPeriodicBoxVectors</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a3c6ab02e4f311c79aad4c55f28798ef9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDefaultPeriodicBoxVectors</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a9c417146c0c1e4e67c76acdaa4bbe5b9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__getstate__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a8a97f085cdc730415d3a782b40a3c31e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__setstate__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a2157e3c1b2bcbbc208f96575e0b2029f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getForces</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>abcd1e61448fc5cca5fb2ddc20c7eaf98</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1System.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CustomBondForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumBonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>abdbbad43fdfbbed3f94e692fb9408309</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a60fc37c08a9f31b416bfb886b9b022f6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumGlobalParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>ab6e417977b8893082640bd0ffc321ecb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>ae954cd79c684f8ace526aa071f2b8721</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a21767f43295ba0214f854b70523d5e3a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerBondParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a5b63bd105e207ad610a2f399cdbbd14b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerBondParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>ad6d4fbfa4b867bc2ed7c3c66c86dfc36</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerBondParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a82d2466f02b0458caf3aa4c3c77c4533</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addGlobalParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a61d5653e19d3420c470f0f60461f10c9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>aaf7b7b2c024d5d00906f9d578713a8ca</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a449a42e4f4e9f90fd99df8d9d5cbc569</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a9cc836114ee4573aa1216bf48a2464b0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a02828d31e7f17877672a1f4abdf70488</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addBond</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a5f2e2dae6e580fba313601c9cf0e09df</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a4d042cfc2c3496159510135c6ac72df7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a78798b222e67ec92255a856a3f51bb31</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomBondForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CustomGBForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumExclusions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>ae1875233e15f64a6311212fad403d292</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a343ee5e4d8090f1d6a1beb7552ddf85a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumGlobalParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>ab6e417977b8893082640bd0ffc321ecb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumTabulatedFunctions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a74e18a3775578273d4d097d859d9e4e3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumFunctions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>acaae110738bcfef3694a289a25c1d484</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumComputedValues</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>ae9bcd720e2f8f23aca9335a7a5084128</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumEnergyTerms</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a8f5cd20ec1a1a7886174b57007339395</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>aaa7fcfc1cf5dbada21b2991d06ad0e4b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a9dc1c5ecb473d056481adb787a3681d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a38e89ed2475ac54e3d8bb67697847449</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>ac7503abda7bc62bbfa6c234f858af026</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerParticleParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>abd12bb8bffb3a4c7af289a860d616bc4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerParticleParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a896c31a0798152d0938fa6d1b169b1f1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerParticleParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a4add3e5537dfcac75789a2376ca07fed</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addGlobalParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a61d5653e19d3420c470f0f60461f10c9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>aaf7b7b2c024d5d00906f9d578713a8ca</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a449a42e4f4e9f90fd99df8d9d5cbc569</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a9cc836114ee4573aa1216bf48a2464b0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a02828d31e7f17877672a1f4abdf70488</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addComputedValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a1adc3685c25ed63d23ff1601a9ed31d3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getComputedValueParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>aa5e8f6ea681972265ffe1587b870074a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setComputedValueParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>aa83464a3341b2b0d2b811c7443b4c6d3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addEnergyTerm</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>acebaa700b4b656f5421ae864c1acb24e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEnergyTermParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a1f1c832f12d121bb9462d6426e233df2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEnergyTermParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a5144240ec7fdb6dc1edd936a1c24f0f1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addExclusion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a5f191693e6e5facaf828e4beeb906680</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getExclusionParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>acb5aa17d086246d0a073b7829533bf99</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setExclusionParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a81efa8014ce5376345dfd4e4df38fe34</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addTabulatedFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>aa3959c07b124798aa1e6686424993dff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTabulatedFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a80e76629fa2c4acccd413a759683293e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTabulatedFunctionName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a050c9afc3a830ab2783f6fca42bd4c48</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>ad33ba04bab02cea985b7f70b8030c46f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a5fc69a25689250fcde6f0cdc14117a70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a65153062c8c10cc34d445914d2442bde</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>aee34d051b028d7b278041e3968e55127</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffNonPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a9a4139e80f5ae78c0b0c7a093bf5b9da</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a4e41ecdcac198d87f89509444bba9968</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>SingleParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a9ef3acc0ecd9db4ccf00f00061769a23</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ParticlePair</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>ad83ead47ca17e5098a280fa1bf95214c</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ParticlePairNoExclusions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomGBForce.html</anchorfile>
      <anchor>a059ac80c84f26768260ab57e587a6df1</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::Continuous2DFunction</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1Continuous2DFunction.html</filename>
    <base>simtk::openmm::openmm::TabulatedFunction</base>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous2DFunction.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous2DFunction.html</anchorfile>
      <anchor>a5fc69a25689250fcde6f0cdc14117a70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous2DFunction.html</anchorfile>
      <anchor>a65153062c8c10cc34d445914d2442bde</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>Copy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous2DFunction.html</anchorfile>
      <anchor>ab4167abc8ce453dc3900becc1ade3a73</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous2DFunction.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Continuous2DFunction.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CMAPTorsionForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumMaps</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>aebf2cd7ef10441079b11df579be74dd0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumTorsions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>a2a656f1b15e1baea82874850697d231f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addMap</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>aaa058a42a0e7f23f181122e6c8ca04cd</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getMapParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>a62b24c0424c6656a9ad5fb506c9c2752</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setMapParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>a5797e91465df0a13b3b09613521af118</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addTorsion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>a3a9735aaf81abdeee86dd0b3f6c942e7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>a330447f62090baae75b0839b0a9aee2d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>ab174b16770b205e2e7d5375a478460ec</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMAPTorsionForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::BrownianIntegrator</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</filename>
    <base>simtk::openmm::openmm::Integrator</base>
    <member kind="function">
      <type>def</type>
      <name>getTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</anchorfile>
      <anchor>a8ff51c967695d54b67dbff4625dc7e2b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</anchorfile>
      <anchor>a8ed5bdb11500567a259a422de0c7f11f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</anchorfile>
      <anchor>ac00749874fd533e33e8a35903ac6b7c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</anchorfile>
      <anchor>ac5290bdbea8bc4d829b8dd87687706a0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</anchorfile>
      <anchor>ae3ad838743b5f0411cb4ca9a256e7cdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</anchorfile>
      <anchor>a0004198be7d9f61149a45b4dd69e00c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1BrownianIntegrator.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::GBVIForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addBond</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a5f2e2dae6e580fba313601c9cf0e09df</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a4d042cfc2c3496159510135c6ac72df7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a78798b222e67ec92255a856a3f51bb31</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumBonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>abdbbad43fdfbbed3f94e692fb9408309</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSolventDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a92f0c5b043c6e73043cbc712e9123c2d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSolventDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a559c0fd23afa63f3c1922424eb909243</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSoluteDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a8de7f9411480311debeaceae13985f1a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSoluteDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a82d6e3286a890d91dad98b4eee83eb5c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>aaa7fcfc1cf5dbada21b2991d06ad0e4b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a9dc1c5ecb473d056481adb787a3681d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a38e89ed2475ac54e3d8bb67697847449</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>ac7503abda7bc62bbfa6c234f858af026</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getBornRadiusScalingMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a6086a732e3c6d16b0e767912aa64ef58</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setBornRadiusScalingMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a57dbe89d60a98169761448ff45bf4ffd</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getQuinticLowerLimitFactor</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>ae2ec831c0a4b4314cc3edd03c1801cb0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setQuinticLowerLimitFactor</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a188989ba836263628d7a507e4a005642</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getQuinticUpperBornRadiusLimit</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a1163f9d41de25502fc78e10dcb23e165</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setQuinticUpperBornRadiusLimit</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a569b94437caee3cbee04446718c9c16f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>aee34d051b028d7b278041e3968e55127</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffNonPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a9a4139e80f5ae78c0b0c7a093bf5b9da</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a4e41ecdcac198d87f89509444bba9968</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoScaling</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>afde6bbe43a855b1ba252623d5233ac9e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>QuinticSpline</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBVIForce.html</anchorfile>
      <anchor>a616f9df3c86ad2b0ebe58d0cbd5d67f2</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaAngleForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumAngles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>a7596f5aa2bbdf397ea357f6a5aa91e92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalAngleCubic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>abf423a28d733dfdd5f8397073b3b2bf4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalAngleCubic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>a2b9e9b5762f51b43460dc4994f058799</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalAngleQuartic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>ae0d5b8505902f3f61be8165c43fed3bd</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalAngleQuartic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>a220845419926e1f26e1cad73179fd239</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalAnglePentic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>a0ca03028aeb848dd7b510046cc572971</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalAnglePentic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>a7a258bf8eafa304bd8b654ecaa8ac562</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAmoebaGlobalAngleSextic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>aecf709d01555c4632e886b550e80f028</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAmoebaGlobalAngleSextic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>aa5f320972a8df39544003f2410a3a5b6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addAngle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>ab5a5dbc348deff447b1a126969c565aa</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAngleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>a449ce8356478bf641cead889395afe05</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAngleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>a3bf461547d7580a5c1e83281268428b9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaAngleForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::DrudeForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumScreenedPairs</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>a91e6ce60b1928ef51baa9c6bd95ff76a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addScreenedPair</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>a2ed1b742391fc3de86cad76c29e71f1b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getScreenedPairParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>afd91440692632d3e06d0dabb9136072a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setScreenedPairParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>abbd539b3e2678caea577f46d0d57969e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::LocalEnergyMinimizer</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1LocalEnergyMinimizer.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LocalEnergyMinimizer.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>minimize</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LocalEnergyMinimizer.html</anchorfile>
      <anchor>acf370cad739d3c4e39386e6f310e2870</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LocalEnergyMinimizer.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::XmlSerializer</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1XmlSerializer.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1XmlSerializer.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>serializeSystem</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1XmlSerializer.html</anchorfile>
      <anchor>a7acdc0003febf6cf067653516e182f76</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>deserializeSystem</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1XmlSerializer.html</anchorfile>
      <anchor>aa119eb955b8da5fabae53669db3c76d3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>serialize</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1XmlSerializer.html</anchorfile>
      <anchor>a668852ee76cabc3befb339df84d9e61a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>deserialize</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1XmlSerializer.html</anchorfile>
      <anchor>a93e3d97c8d85c4195112b09c61729434</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1XmlSerializer.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaMultipoleForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumMultipoles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>aa7786affb0bc1c724c23991615df84c7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>aaa7fcfc1cf5dbada21b2991d06ad0e4b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a9dc1c5ecb473d056481adb787a3681d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPolarizationType</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a85ab9b90baeef6122c77bf6c92c1c008</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPolarizationType</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>abac9582365337fb4feb966de24958f98</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a38e89ed2475ac54e3d8bb67697847449</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>ac7503abda7bc62bbfa6c234f858af026</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAEwald</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a660831aa0c91d7baeac7e15a1156ed43</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAEwald</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a4a5e43393609cb7ed48b251c0daba12b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPmeBSplineOrder</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a5ff9329de870aeb6a3a7c9842c0b49c0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPmeGridDimensions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a8613e4cb790b90077a8c2649f51d77cf</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPmeGridDimensions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>ad58c865ec96b5c1616829d272193faf1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addMultipole</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>aaf6a77eeda650209d9eb92fbfea90ee1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getMultipoleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a7162dab93c25d29f9cf366f8e1003a24</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setMultipoleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>ad30e2dfcac97bac28f3e99e464a94b1a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setCovalentMap</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>aa7b1ce596a0ef3fda718ddded2123a02</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCovalentMap</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a9143cad1a36ece15af5811a41f1b312d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCovalentMaps</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>af1a5d6c2c7c9d76e7aca48c5785048e2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getMutualInducedMaxIterations</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>af734005d5db949879858ff7b7d37c542</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setMutualInducedMaxIterations</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a824bbabc928bae7ef0959a5829127233</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getMutualInducedTargetEpsilon</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a7db28e153e3fc83d610b0a6d3c7c3de9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setMutualInducedTargetEpsilon</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a10c330a68fece67262c46a3fc262ccbf</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEwaldErrorTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>afbc5d0cc996f5d6dd5c9a3b02bca3076</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEwaldErrorTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a3b6a666987670f2ead08f8daea20e987</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getInducedDipoles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a7da0c133a47a0331cdfdb3c04c14eb91</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getElectrostaticPotential</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a9782c4875a43f7c58cce87e3b86d638a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSystemMultipoleMoments</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>ab1aa364cf800d69aea5a75e18f47d551</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>aee34d051b028d7b278041e3968e55127</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>PME</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>acc730434f25bcee3f56dd1f0fe78df61</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>Mutual</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>ae6498333ff36db9747667b24555a78f4</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>Direct</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a4853d3aea066eba9ef3740585c107a6b</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ZThenX</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a94f887ce4a8f90b742f8f2d367f5a97a</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>Bisector</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a1afb70ebb3c61b83d739499d8302ffab</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ZBisect</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a35dbce3f70472969a01f0135063f68c7</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ThreeFold</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a4bf31fa9686bde5da39f1b00aaf5246d</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ZOnly</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a2d616f8e599c5b4240ab21620152e11f</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoAxisType</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a6f478d464ad4ea7c1a1f28df11cebebe</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>LastAxisTypeIndex</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a90564730867ff3edbb9d258ddf742625</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>Covalent12</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a15502cf758f2df6a80c107d68dab3b3c</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>Covalent13</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a1ba0211acfd5361f2ec21dc12a734ac7</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>Covalent14</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a209fbcd499d6e75d35d899dce156e6c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>Covalent15</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>aab4dc2860ff20d21959c6b65cd462ebc</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>PolarizationCovalent11</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a48fb7bf681bd265479cb45370b0c887d</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>PolarizationCovalent12</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>acd172d012b26d84a2f5d1a8f8602b20c</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>PolarizationCovalent13</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a9e7b43945dcb8abb6a6ff6cab59474bf</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>PolarizationCovalent14</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>aab7cf551663ad493d48c3f169411eddc</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CovalentEnd</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaMultipoleForce.html</anchorfile>
      <anchor>a791b986adafc147a604f949120fbb279</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CMMotionRemover</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CMMotionRemover.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMMotionRemover.html</anchorfile>
      <anchor>ae9b10d3a445707358af098a79308080a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFrequency</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMMotionRemover.html</anchorfile>
      <anchor>a1dc3176a11fd56a46fc4c48689b027a2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMMotionRemover.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMMotionRemover.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CMMotionRemover.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::TwoParticleAverageSite</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1TwoParticleAverageSite.html</filename>
    <base>simtk::openmm::openmm::VirtualSite</base>
    <member kind="function">
      <type>def</type>
      <name>getWeight</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1TwoParticleAverageSite.html</anchorfile>
      <anchor>afbdaa386af6e104adb100621218008c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1TwoParticleAverageSite.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1TwoParticleAverageSite.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1TwoParticleAverageSite.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::Discrete2DFunction</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1Discrete2DFunction.html</filename>
    <base>simtk::openmm::openmm::TabulatedFunction</base>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete2DFunction.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete2DFunction.html</anchorfile>
      <anchor>a5fc69a25689250fcde6f0cdc14117a70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete2DFunction.html</anchorfile>
      <anchor>a65153062c8c10cc34d445914d2442bde</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>Copy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete2DFunction.html</anchorfile>
      <anchor>ab4167abc8ce453dc3900becc1ade3a73</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete2DFunction.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete2DFunction.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::LangevinIntegrator</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</filename>
    <base>simtk::openmm::openmm::Integrator</base>
    <member kind="function">
      <type>def</type>
      <name>getTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</anchorfile>
      <anchor>a8ff51c967695d54b67dbff4625dc7e2b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</anchorfile>
      <anchor>a8ed5bdb11500567a259a422de0c7f11f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</anchorfile>
      <anchor>ac00749874fd533e33e8a35903ac6b7c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFriction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</anchorfile>
      <anchor>ac5290bdbea8bc4d829b8dd87687706a0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</anchorfile>
      <anchor>ae3ad838743b5f0411cb4ca9a256e7cdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</anchorfile>
      <anchor>a0004198be7d9f61149a45b4dd69e00c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1LangevinIntegrator.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::VerletIntegrator</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1VerletIntegrator.html</filename>
    <base>simtk::openmm::openmm::Integrator</base>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VerletIntegrator.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VerletIntegrator.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VerletIntegrator.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1VerletIntegrator.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::DrudeSCFIntegrator</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1DrudeSCFIntegrator.html</filename>
    <base>simtk::openmm::openmm::Integrator</base>
    <member kind="function">
      <type>def</type>
      <name>getMinimizationErrorTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeSCFIntegrator.html</anchorfile>
      <anchor>a0a4b66f393b46486aff8824e20f198a5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setMinimizationErrorTolerance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeSCFIntegrator.html</anchorfile>
      <anchor>aa1618c57559c6d5e227b3aada7ada83a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeSCFIntegrator.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeSCFIntegrator.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeSCFIntegrator.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1DrudeSCFIntegrator.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::OutOfPlaneSite</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1OutOfPlaneSite.html</filename>
    <base>simtk::openmm::openmm::VirtualSite</base>
    <member kind="function">
      <type>def</type>
      <name>getWeight12</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1OutOfPlaneSite.html</anchorfile>
      <anchor>a673a469289c444993bb3a80903e89a34</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getWeight13</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1OutOfPlaneSite.html</anchorfile>
      <anchor>a0d8dbec5cbdfeff2de0fcb434c733cc6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getWeightCross</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1OutOfPlaneSite.html</anchorfile>
      <anchor>a2d104b00990a098a2f27540dbfff93f7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1OutOfPlaneSite.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1OutOfPlaneSite.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1OutOfPlaneSite.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaStretchBendForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaStretchBendForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumStretchBends</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaStretchBendForce.html</anchorfile>
      <anchor>adc891de3f3f7e6d2bffc3e35bbe20149</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addStretchBend</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaStretchBendForce.html</anchorfile>
      <anchor>aac01d4f5df0ae4d76365e780103a5c75</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getStretchBendParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaStretchBendForce.html</anchorfile>
      <anchor>a430b5d75edce1a92be745d33171f0b88</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setStretchBendParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaStretchBendForce.html</anchorfile>
      <anchor>a80ab00104d3f4d0424a695eadcd49d04</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaStretchBendForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaStretchBendForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaStretchBendForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaStretchBendForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaWcaDispersionForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEpso</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a83a5458259ef50b0f43c047f49360947</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEpsh</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>aac0f60c8d1d46b4b73781d77fba5eced</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRmino</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a5a3a5df2f97cf1774803864027ff98ab</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRminh</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a479571d2e0fa586a816f24590f2afc08</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getAwater</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a2fe133e8e2cb25c45e98d9e23eee094f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getShctd</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>aa30493c9f992777aa31d7335cfe18da9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getDispoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>ac691d046726e2922ed492686be29376b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSlevy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a27d60d529b521cbd3d2533ac8db14327</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEpso</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>aff198f4e9526b1c9427204a9f0bcafd6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEpsh</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>ada30e5f1ed77dfb690a8d5f2f959d0a1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRmino</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a276092b36c16199b8d2ca444e8b9a67f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRminh</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a8dea724f50f9b35794b586c428dee226</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setAwater</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a5d816c8936624956c28d78106eaede01</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setShctd</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a7d263aa25baae493b9d42682c233174f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setDispoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a96657c5cdd91270d85d6d64893a37127</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSlevy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a403f5d31596f18b2cc8b05dce9bc7770</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaWcaDispersionForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaVdwForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSigmaCombiningRule</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>aeaca9ff5f473a06a59934d46c621472b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSigmaCombiningRule</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>ae18648a97f8fde3b6a8e66cb6e529ce9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEpsilonCombiningRule</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>aeebbcb057a087233d4d4e2403ab7cc9e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEpsilonCombiningRule</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>ad9d80fcb0f123a6f67ecfcb06e2b40b2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getUseDispersionCorrection</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>a5e7f52eb75072be5cf47895eed8fa779</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setUseDispersionCorrection</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>aa705db12b3d8998f8066257d76a060c0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleExclusions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>ae8ae76340ee044124d5295e89fc8bbd8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleExclusions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>a4b0485af1ba2479806e6d2ef73cd3e21</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>ac82927c412e4c727207e3668e73e64bc</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>a7cfe88cab62e3ea1b6b494f040abb260</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>aaa7fcfc1cf5dbada21b2991d06ad0e4b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>a9dc1c5ecb473d056481adb787a3681d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>aee34d051b028d7b278041e3968e55127</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaVdwForce.html</anchorfile>
      <anchor>a4e41ecdcac198d87f89509444bba9968</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CustomIntegrator</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</filename>
    <base>simtk::openmm::openmm::Integrator</base>
    <member kind="function">
      <type>def</type>
      <name>getNumGlobalVariables</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a1345a1dd3386bec0c1569e7f46d57c2a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerDofVariables</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a735d60f1a97e337d3f414a4b59cbf783</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumComputations</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a7dc0ea6ef07502a2130c9eca1ed27af6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addGlobalVariable</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a285e159ee6efe66f1b4266436c8ea182</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalVariableName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>ad52872f1f940f8bef12c6ccfa0b66ccd</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerDofVariable</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a1cbff1495dc181e912fa4d4057317062</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerDofVariableName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a4fcc1de0bc9775ff5601612cb0be1d46</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalVariable</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>aeaf9aedda0c55aacd56b24240478c87d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalVariableByName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a648eadb1bcb55c8c1725777a65687148</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalVariable</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>afe53845d1db5d66b354e5902c1353a5e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalVariableByName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a7daf8ba2ee6498bf03e2e1fe11015616</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerDofVariableByName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a48f3ee1540e3d22ed5c94edc1f9bcbf0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerDofVariable</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>aa468106895751fb99a6449bfa9153aea</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerDofVariableByName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a428c2acdaa4ab13e89e7dc1ce47d9ef7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addComputeGlobal</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a2133522fec05ac560898677466f5ea5c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addComputePerDof</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>abdf77721d56cde62e1d6a6cd99ff9b14</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addComputeSum</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a582092e27a1eae61dbb341bc1cbcbc81</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addConstrainPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>aeaebf4b06e055ca40d22d0b5b8726fe6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addConstrainVelocities</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>ae1d794b81afb67c37c45e81a0b19049d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addUpdateContextState</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>adbdf8c7dc3fa0de1c2c9d6866bc3fa8a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getComputationStep</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a816b4df5d8d206bd8ebfbc3489d8cb5f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getKineticEnergyExpression</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a157636f0f93ae3188e02260cc517bfec</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setKineticEnergyExpression</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>ae40ccaaadc4b2d1b0ac3871cbce38d65</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>ae3ad838743b5f0411cb4ca9a256e7cdb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setRandomNumberSeed</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a0004198be7d9f61149a45b4dd69e00c5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>step</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a95621a488f4bd554b9031ae0416b098d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerDofVariable</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a24692b7b4398c08fc69c9d1c1d645291</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ComputeGlobal</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a0a6ce4a78847f237038fbbd62c7cced1</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ComputePerDof</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a306f480a25460ce1e8469b46e6561958</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ComputeSum</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a8a6839bc732f98c092dc0b53cf496ec9</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ConstrainPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>aab34ded7a33ba8e59528550b316bb504</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>ConstrainVelocities</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a2d940f0b9f7d8ac9e8020f832f8cc170</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>UpdateContextState</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomIntegrator.html</anchorfile>
      <anchor>a4c319d618aaf7f16fca866095152d511</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CustomCompoundBondForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumParticlesPerBond</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a6c4f82c85802fa75f63724245deaa668</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumBonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>abdbbad43fdfbbed3f94e692fb9408309</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a60fc37c08a9f31b416bfb886b9b022f6</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumGlobalParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>ab6e417977b8893082640bd0ffc321ecb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumTabulatedFunctions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a74e18a3775578273d4d097d859d9e4e3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumFunctions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>acaae110738bcfef3694a289a25c1d484</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>ae954cd79c684f8ace526aa071f2b8721</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a21767f43295ba0214f854b70523d5e3a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerBondParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a5b63bd105e207ad610a2f399cdbbd14b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerBondParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>ad6d4fbfa4b867bc2ed7c3c66c86dfc36</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerBondParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a82d2466f02b0458caf3aa4c3c77c4533</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addGlobalParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a61d5653e19d3420c470f0f60461f10c9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>aaf7b7b2c024d5d00906f9d578713a8ca</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a449a42e4f4e9f90fd99df8d9d5cbc569</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a9cc836114ee4573aa1216bf48a2464b0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a02828d31e7f17877672a1f4abdf70488</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addBond</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a5f2e2dae6e580fba313601c9cf0e09df</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a4d042cfc2c3496159510135c6ac72df7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setBondParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a78798b222e67ec92255a856a3f51bb31</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addTabulatedFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>aa3959c07b124798aa1e6686424993dff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTabulatedFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a80e76629fa2c4acccd413a759683293e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTabulatedFunctionName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a050c9afc3a830ab2783f6fca42bd4c48</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>ad33ba04bab02cea985b7f70b8030c46f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a5fc69a25689250fcde6f0cdc14117a70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a65153062c8c10cc34d445914d2442bde</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomCompoundBondForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::GBSAOBCForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSolventDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a92f0c5b043c6e73043cbc712e9123c2d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSolventDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a559c0fd23afa63f3c1922424eb909243</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSoluteDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a8de7f9411480311debeaceae13985f1a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSoluteDielectric</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a82d6e3286a890d91dad98b4eee83eb5c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSurfaceAreaEnergy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a3b2de262249ee7ab9f837b2192ec5c62</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setSurfaceAreaEnergy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>aad9fb468e66a0b78fb45e0df402acc67</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>aaa7fcfc1cf5dbada21b2991d06ad0e4b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a9dc1c5ecb473d056481adb787a3681d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a38e89ed2475ac54e3d8bb67697847449</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>ac7503abda7bc62bbfa6c234f858af026</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>aee34d051b028d7b278041e3968e55127</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffNonPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a9a4139e80f5ae78c0b0c7a093bf5b9da</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1GBSAOBCForce.html</anchorfile>
      <anchor>a4e41ecdcac198d87f89509444bba9968</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::CustomManyParticleForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumParticlesPerSet</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a33bcee054882991352c5f0c32410d514</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a97567b2d1e377231af8329548c0d7d92</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumExclusions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>ae1875233e15f64a6311212fad403d292</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumPerParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a343ee5e4d8090f1d6a1beb7552ddf85a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumGlobalParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>ab6e417977b8893082640bd0ffc321ecb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNumTabulatedFunctions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a74e18a3775578273d4d097d859d9e4e3</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>ae954cd79c684f8ace526aa071f2b8721</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setEnergyFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a21767f43295ba0214f854b70523d5e3a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>aaa7fcfc1cf5dbada21b2991d06ad0e4b</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setNonbondedMethod</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a9dc1c5ecb473d056481adb787a3681d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPermutationMode</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>ac3ba8297a73d0da5ef663a5185d7fcd9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPermutationMode</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a3be93b43340645849a35760a0c61e863</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a38e89ed2475ac54e3d8bb67697847449</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setCutoffDistance</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>ac7503abda7bc62bbfa6c234f858af026</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPerParticleParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>abd12bb8bffb3a4c7af289a860d616bc4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPerParticleParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a896c31a0798152d0938fa6d1b169b1f1</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPerParticleParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a4add3e5537dfcac75789a2376ca07fed</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addGlobalParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a61d5653e19d3420c470f0f60461f10c9</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>aaf7b7b2c024d5d00906f9d578713a8ca</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a449a42e4f4e9f90fd99df8d9d5cbc569</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a9cc836114ee4573aa1216bf48a2464b0</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setGlobalParameterDefaultValue</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a02828d31e7f17877672a1f4abdf70488</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a1a87666515c7a104415233e71c7231ff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a6a55dfacd0190a574e101972178e55b8</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParticleParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>ac4ebfbc8abd1e572d97f58e14a78f899</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addExclusion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a5f191693e6e5facaf828e4beeb906680</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getExclusionParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>acb5aa17d086246d0a073b7829533bf99</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setExclusionParticles</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a81efa8014ce5376345dfd4e4df38fe34</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createExclusionsFromBonds</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>ae8573343a1cea4a9a264102c4710a4e7</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTypeFilter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a017e56f7f2de2585a0fff12bc6ed7419</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTypeFilter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a0f4eb4ab0c8b689cd11e8689a5a72710</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addTabulatedFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>aa3959c07b124798aa1e6686424993dff</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTabulatedFunction</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a80e76629fa2c4acccd413a759683293e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getTabulatedFunctionName</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a050c9afc3a830ab2783f6fca42bd4c48</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>NoCutoff</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>aee34d051b028d7b278041e3968e55127</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffNonPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a9a4139e80f5ae78c0b0c7a093bf5b9da</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>CutoffPeriodic</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a4e41ecdcac198d87f89509444bba9968</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>SinglePermutation</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a86338a9594689f2ab7896ed15af9ca34</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable" static="yes">
      <type></type>
      <name>UniqueCentralParticle</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1CustomManyParticleForce.html</anchorfile>
      <anchor>a2b754102ea8c4d24da9efc10839d48db</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::Context</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1Context.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getSystem</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a488e7f43351ce4e2770cfc8ff27d758a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getIntegrator</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>aab6f6521647fbd8bd543d3b15f7f6eb2</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPlatform</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a15ca6b11f98736f49529eb9526835952</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setTime</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a525e3e8f6fd0952fe8719b4d7ea85d9a</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPositions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a7ed83dd1feeaf80d40a45e6385f0b646</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setVelocities</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a2476acb8c0c8b51058e4155bf91fef2c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setVelocitiesToTemperature</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>ad857cf63c278e71f97d4711cfe59094d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a78a24aaa3856967a76892183c570a289</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setParameter</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a7edcb6062f0e262d3e7d8ee501c267e4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPeriodicBoxVectors</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>ab0985db9b1ea6fbc035ef0bef702cc6d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>applyConstraints</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>ae9c799ec7a69450bdb59336655c9f495</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>applyVelocityConstraints</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>aeeaa9c07a4a2c8bf0382b62193d4f18c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>computeVirtualSites</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>aafe4f462f772711cd36ac0dc8f348f83</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>reinitialize</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a4e3bad4a785f0c8566d248de378d78d4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getMolecules</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>aeba432a8d44bc8707893bbdad8361a84</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getState</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a4ce4ebac6ce95bd44e0d8c96d2f7229c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setState</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a008e14f848fee58b6e0ac83f5beb066f</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>createCheckpoint</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a9632026a62e3eeaa0cfc7482a6836f5c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>loadCheckpoint</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>afdb6544dc9042d66649bf7a33444102d</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Context.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::AmoebaPiTorsionForce</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1AmoebaPiTorsionForce.html</filename>
    <base>simtk::openmm::openmm::Force</base>
    <member kind="function">
      <type>def</type>
      <name>getNumPiTorsions</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaPiTorsionForce.html</anchorfile>
      <anchor>ae9243f7f7460625575da8d5449a770a4</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>addPiTorsion</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaPiTorsionForce.html</anchorfile>
      <anchor>a05179f79db8442e03c09e4c8b9bee702</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getPiTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaPiTorsionForce.html</anchorfile>
      <anchor>a72c9c0ddecc0f108a7127ec4cb6acd49</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setPiTorsionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaPiTorsionForce.html</anchorfile>
      <anchor>a0ca897a8a898f5a2d1173aca91a37d94</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>updateParametersInContext</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaPiTorsionForce.html</anchorfile>
      <anchor>a1c09a31ff2513b3a2c1ccf0390020ebb</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaPiTorsionForce.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaPiTorsionForce.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1AmoebaPiTorsionForce.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::openmm::Discrete1DFunction</name>
    <filename>classsimtk_1_1openmm_1_1openmm_1_1Discrete1DFunction.html</filename>
    <base>simtk::openmm::openmm::TabulatedFunction</base>
    <member kind="function">
      <type>def</type>
      <name>__init__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete1DFunction.html</anchorfile>
      <anchor>ac775ee34451fdfa742b318538164070e</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>getFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete1DFunction.html</anchorfile>
      <anchor>a5fc69a25689250fcde6f0cdc14117a70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>setFunctionParameters</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete1DFunction.html</anchorfile>
      <anchor>a65153062c8c10cc34d445914d2442bde</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>Copy</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete1DFunction.html</anchorfile>
      <anchor>ab4167abc8ce453dc3900becc1ade3a73</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__del__</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete1DFunction.html</anchorfile>
      <anchor>afa251912978c7d5ccf7e5a027a4d12ee</anchor>
      <arglist></arglist>
    </member>
    <member kind="variable">
      <type></type>
      <name>this</name>
      <anchorfile>classsimtk_1_1openmm_1_1openmm_1_1Discrete1DFunction.html</anchorfile>
      <anchor>a05c09a5e9d53fa7adf0a7936038c2fa3</anchor>
      <arglist></arglist>
    </member>
  </compound>
  <compound kind="class">
    <name>simtk::openmm::vec3::Vec3</name>
    <filename>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</filename>
    <member kind="function">
      <type>def</type>
      <name>__new__</name>
      <anchorfile>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</anchorfile>
      <anchor>a2f15a4676204349e06bcced484b06b70</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__getnewargs__</name>
      <anchorfile>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</anchorfile>
      <anchor>a4fb6b651cd487ae5ebaf2b6c4376e9fe</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__add__</name>
      <anchorfile>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</anchorfile>
      <anchor>ae92943b217d29a45ddcbbba2f7208afc</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__radd__</name>
      <anchorfile>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</anchorfile>
      <anchor>a6c4d3a579d0fd0dc4796630edc287194</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__sub__</name>
      <anchorfile>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</anchorfile>
      <anchor>a92f51217c100657d0bf6f97b150c0a7c</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__rsub__</name>
      <anchorfile>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</anchorfile>
      <anchor>a26684466f80bb9a04c0ce1d592b89251</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__mul__</name>
      <anchorfile>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</anchorfile>
      <anchor>a48a7267a9f9d29d1514e713744202146</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__rmul__</name>
      <anchorfile>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</anchorfile>
      <anchor>a1f6ed07429726fb8ffc131d2fea52662</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__div__</name>
      <anchorfile>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</anchorfile>
      <anchor>ac3c5c39796d9cc1889749840f456b3e5</anchor>
      <arglist></arglist>
    </member>
    <member kind="function">
      <type>def</type>
      <name>__deepcopy__</name>
      <anchorfile>classsimtk_1_1openmm_1_1vec3_1_1Vec3.html</anchorfile>
      <anchor>a0fc7f009b31b1a6b05d4d3d97993c437</anchor>
      <arglist></arglist>
    </member>
  </compound>
</tagfile>
