### - c -

- calcDispersionCorrection() : NonbondedForceImpl , AmoebaVdwForceImpl
- calcEwaldParameters() : NonbondedForceImpl
- calcForcesAndEnergy() : AndersenThermostatImpl , CustomAngleForceImpl , CustomTorsionForceImpl , AmoebaInPlaneAngleForceImpl , AmoebaMultipoleForceImpl , ForceImpl , AmoebaOutOfPlaneBendForceImpl , AmoebaPiTorsionForceImpl , CustomBondForceImpl , GBSAOBCForceImpl , AmoebaStretchBendForceImpl , AmoebaTorsionTorsionForceImpl , GBVIForceImpl , AmoebaVdwForceImpl , AmoebaWcaDispersionForceImpl , CMAPTorsionForceImpl , CustomCompoundBondForceImpl , HarmonicAngleForceImpl , HarmonicBondForceImpl , CustomExternalForceImpl , MonteCarloAnisotropicBarostatImpl , MonteCarloBarostatImpl , CMMotionRemoverImpl , CustomGBForceImpl , MonteCarloMembraneBarostatImpl , NonbondedForceImpl , CustomHbondForceImpl , PeriodicTorsionForceImpl , RBTorsionForceImpl , ContextImpl , CustomManyParticleForceImpl , DrudeForceImpl , AmoebaAngleForceImpl , CustomNonbondedForceImpl , AmoebaBondForceImpl , AmoebaGeneralizedKirkwoodForceImpl
- calcKineticEnergy() : ContextImpl
- calcLongRangeCorrection() : CustomNonbondedForceImpl
- calcMapDerivatives() : CMAPTorsionForceImpl
- calcParticleGroups() : AndersenThermostatImpl
- calcPMEParameters() : NonbondedForceImpl
- cleanup() : BrownianIntegrator , CustomIntegrator , Integrator , LangevinIntegrator , VariableLangevinIntegrator , VariableVerletIntegrator , VerletIntegrator , DrudeLangevinIntegrator , DrudeSCFIntegrator , RPMDIntegrator
- CMAPTorsionForce() : CMAPTorsionForce
- CMAPTorsionForceImpl() : CMAPTorsionForceImpl
- CMMotionRemover() : CMMotionRemover
- CMMotionRemoverImpl() : CMMotionRemoverImpl
- CollisionFrequency() : AndersenThermostat
- computeKineticEnergy() : VariableLangevinIntegrator , VariableVerletIntegrator , VerletIntegrator , DrudeLangevinIntegrator , DrudeSCFIntegrator , RPMDIntegrator , BrownianIntegrator , CustomIntegrator , Integrator , LangevinIntegrator
- computeVirtualSites() : Context , ContextImpl
- Context() : Context
- contextCreated() : Platform
- contextDestroyed() : Platform
- ContextImpl() : ContextImpl
- Continuous1DFunction() : Continuous1DFunction
- Continuous2DFunction() : Continuous2DFunction
- Continuous3DFunction() : Continuous3DFunction
- Copy() : TabulatedFunction , Continuous1DFunction , Continuous2DFunction , Continuous3DFunction , Discrete1DFunction , Discrete2DFunction , Discrete3DFunction
- create2DNaturalSpline() : SplineFitter
- create3DNaturalSpline() : SplineFitter
- createCheckpoint() : ContextImpl , Context
- createExceptionsFromBonds() : NonbondedForce
- createExclusionsFromBonds() : CustomManyParticleForce , CustomNonbondedForce
- createImpl() : AmoebaAngleForce , AmoebaVdwForce , CustomExternalForce , AmoebaWcaDispersionForce , AmoebaInPlaneAngleForce , GBVIForce , CustomNonbondedForce , AndersenThermostat , AmoebaStretchBendForce , CustomManyParticleForce , RBTorsionForce , CustomCompoundBondForce , CustomAngleForce , MonteCarloAnisotropicBarostat , PeriodicTorsionForce , HarmonicAngleForce , CMMotionRemover , NonbondedForce , HarmonicBondForce , MonteCarloBarostat , CustomGBForce , Force , AmoebaPiTorsionForce , CMAPTorsionForce , GBSAOBCForce , CustomHbondForce , CustomTorsionForce , AmoebaTorsionTorsionForce , CustomBondForce , DrudeForce , AmoebaBondForce , AmoebaGeneralizedKirkwoodForce , AmoebaOutOfPlaneBendForce , AmoebaMultipoleForce , MonteCarloMembraneBarostat
- createKernel() : Platform
- createKernelImpl() : KernelFactory
- createNaturalSpline() : SplineFitter
- createPeriodicSpline() : SplineFitter
- cross() : Vec3
- CustomAngleForce() : CustomAngleForce
- CustomAngleForceImpl() : CustomAngleForceImpl
- CustomBondForce() : CustomBondForce
- CustomBondForceImpl() : CustomBondForceImpl
- CustomCompoundBondForce() : CustomCompoundBondForce
- CustomCompoundBondForceImpl() : CustomCompoundBondForceImpl
- CustomExternalForce() : CustomExternalForce
- CustomExternalForceImpl() : CustomExternalForceImpl
- CustomGBForce() : CustomGBForce
- CustomGBForceImpl() : CustomGBForceImpl
- CustomHbondForce() : CustomHbondForce
- CustomHbondForceImpl() : CustomHbondForceImpl
- CustomIntegrator() : CustomIntegrator
- CustomManyParticleForce() : CustomManyParticleForce
- CustomManyParticleForceImpl() : CustomManyParticleForceImpl
- CustomNonbondedForce() : CustomNonbondedForce
- CustomNonbondedForceImpl() : CustomNonbondedForceImpl
- CustomTorsionForce() : CustomTorsionForce
- CustomTorsionForceImpl() : CustomTorsionForceImpl