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Chain simtk::openmm::app::topology
chain simtk::openmm::app::topology::Residue
chains simtk::openmm::app::topology::Topology
CharmmCrdFile simtk::openmm::app::charmmcrdfiles
CharmmParameterSet simtk::openmm::app::charmmparameterset
CharmmPsfFile simtk::openmm::app::charmmpsffile
CharmmRstFile simtk::openmm::app::charmmcrdfiles
CheckpointReporter simtk::openmm::app::checkpointreporter
close simtk::openmm::app::desmonddmsfile::DesmondDMSFile
CMAP_FORCE_GROUP simtk::openmm::app::charmmpsffile::CharmmPsfFile
cmap_list simtk::openmm::app::charmmpsffile::CharmmPsfFile
cmap_types simtk::openmm::app::charmmparameterset::CharmmParameterSet
CMAPTorsionForce simtk::openmm::openmm
CMMotionRemover simtk::openmm::openmm
CollisionFrequency simtk::openmm::openmm::AndersenThermostat
ComputeGlobal simtk::openmm::openmm::CustomIntegrator
ComputePerDof simtk::openmm::openmm::CustomIntegrator
ComputeSum simtk::openmm::openmm::CustomIntegrator
computeVirtualSites simtk::openmm::openmm::Context
condense simtk::openmm::app::charmmparameterset::CharmmParameterSet
ConstantVolume simtk::openmm::openmm::MonteCarloMembraneBarostat
ConstrainPositions simtk::openmm::openmm::CustomIntegrator
ConstrainVelocities simtk::openmm::openmm::CustomIntegrator
Context simtk::openmm::openmm
context simtk::openmm::app::simulation::Simulation
Continuous1DFunction simtk::openmm::openmm
Continuous2DFunction simtk::openmm::openmm
Continuous3DFunction simtk::openmm::openmm
convertWater simtk::openmm::app::modeller::Modeller
Copy
simtk::openmm::openmm::TabulatedFunction.Copy() simtk::openmm::openmm::Discrete3DFunction.Copy() simtk::openmm::openmm::Continuous3DFunction.Copy() simtk::openmm::openmm::Continuous1DFunction.Copy() simtk::openmm::openmm::Continuous2DFunction.Copy() simtk::openmm::openmm::Discrete2DFunction.Copy() simtk::openmm::openmm::Discrete1DFunction.Copy()
Covalent12 simtk::openmm::openmm::AmoebaMultipoleForce
Covalent13 simtk::openmm::openmm::AmoebaMultipoleForce
Covalent14 simtk::openmm::openmm::AmoebaMultipoleForce
Covalent15 simtk::openmm::openmm::AmoebaMultipoleForce
CovalentEnd simtk::openmm::openmm::AmoebaMultipoleForce
createCheckpoint simtk::openmm::openmm::Context
createDisulfideBonds simtk::openmm::app::topology::Topology
createExceptionsFromBonds simtk::openmm::openmm::NonbondedForce
createExclusionsFromBonds
simtk::openmm::openmm::CustomNonbondedForce.createExclusionsFromBonds() simtk::openmm::openmm::CustomManyParticleForce.createExclusionsFromBonds()
createStandardBonds simtk::openmm::app::topology::Topology
createSystem
simtk::openmm::app::amberprmtopfile::AmberPrmtopFile.createSystem() simtk::openmm::app::charmmpsffile::CharmmPsfFile.createSystem() simtk::openmm::app::desmonddmsfile::DesmondDMSFile.createSystem() simtk::openmm::app::forcefield::ForceField.createSystem() simtk::openmm::app::gromacstopfile::GromacsTopFile.createSystem()
currentStep simtk::openmm::app::simulation::Simulation
CustomAngleForce simtk::openmm::openmm
CustomBondForce simtk::openmm::openmm
CustomCompoundBondForce simtk::openmm::openmm
CustomExternalForce simtk::openmm::openmm
CustomGBForce simtk::openmm::openmm
CustomHbondForce simtk::openmm::openmm
CustomIntegrator simtk::openmm::openmm
CustomManyParticleForce simtk::openmm::openmm
CustomNonbondedForce simtk::openmm::openmm
CustomTorsionForce simtk::openmm::openmm
CutoffNonPeriodic
simtk::openmm::openmm::CustomNonbondedForce.CutoffNonPeriodic() simtk::openmm::openmm::CustomHbondForce.CutoffNonPeriodic() simtk::openmm::openmm::NonbondedForce.CutoffNonPeriodic() simtk::openmm::openmm::CustomGBForce.CutoffNonPeriodic() simtk::openmm::openmm::GBVIForce.CutoffNonPeriodic() simtk::openmm::openmm::GBSAOBCForce.CutoffNonPeriodic() simtk::openmm::openmm::CustomManyParticleForce.CutoffNonPeriodic()
CutoffNonPeriodic simtk::openmm::app::forcefield
CutoffPeriodic
simtk::openmm::openmm::CustomNonbondedForce.CutoffPeriodic() simtk::openmm::openmm::CustomHbondForce.CutoffPeriodic() simtk::openmm::openmm::NonbondedForce.CutoffPeriodic() simtk::openmm::openmm::CustomGBForce.CutoffPeriodic() simtk::openmm::openmm::GBVIForce.CutoffPeriodic() simtk::openmm::openmm::AmoebaVdwForce.CutoffPeriodic() simtk::openmm::openmm::GBSAOBCForce.CutoffPeriodic() simtk::openmm::openmm::CustomManyParticleForce.CutoffPeriodic()
CutoffPeriodic simtk::openmm::app::forcefield
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