Here is a list of all class members with links to the classes they belong to:

### - c -

- chain : Residue
- chains() : Topology
- close() : DesmondDMSFile
- CMAP_FORCE_GROUP : CharmmPsfFile
- cmap_list : CharmmPsfFile
- cmap_types : CharmmParameterSet
- CollisionFrequency() : AndersenThermostat
- ComputeGlobal : CustomIntegrator
- ComputePerDof : CustomIntegrator
- ComputeSum : CustomIntegrator
- computeVirtualSites() : Context
- condense() : CharmmParameterSet
- ConstantVolume : MonteCarloMembraneBarostat
- ConstrainPositions : CustomIntegrator
- ConstrainVelocities : CustomIntegrator
- context : Simulation
- convertWater() : Modeller
- Copy() : TabulatedFunction , Discrete3DFunction , Continuous3DFunction , Continuous1DFunction , Continuous2DFunction , Discrete2DFunction , Discrete1DFunction
- Covalent12 : AmoebaMultipoleForce
- Covalent13 : AmoebaMultipoleForce
- Covalent14 : AmoebaMultipoleForce
- Covalent15 : AmoebaMultipoleForce
- CovalentEnd : AmoebaMultipoleForce
- createCheckpoint() : Context
- createDisulfideBonds() : Topology
- createExceptionsFromBonds() : NonbondedForce
- createExclusionsFromBonds() : CustomNonbondedForce , CustomManyParticleForce
- createStandardBonds() : Topology
- createSystem() : AmberPrmtopFile , CharmmPsfFile , DesmondDMSFile , ForceField , GromacsTopFile
- currentStep : Simulation
- CutoffNonPeriodic : CustomNonbondedForce , GBSAOBCForce , NonbondedForce , CustomHbondForce , CustomManyParticleForce , GBVIForce , CustomGBForce
- CutoffPeriodic : CustomHbondForce , NonbondedForce , GBSAOBCForce , AmoebaVdwForce , CustomManyParticleForce , CustomGBForce , GBVIForce , CustomNonbondedForce