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segid simtk::openmm::app::charmmcrdfiles::CharmmCrdFile
serialize simtk::openmm::openmm::XmlSerializer
serializeSystem simtk::openmm::openmm::XmlSerializer
setAcceptorParameters simtk::openmm::openmm::CustomHbondForce
setAEwald simtk::openmm::openmm::AmoebaMultipoleForce
setAmoebaGlobalAngleCubic simtk::openmm::openmm::AmoebaAngleForce
setAmoebaGlobalAnglePentic simtk::openmm::openmm::AmoebaAngleForce
setAmoebaGlobalAngleQuartic simtk::openmm::openmm::AmoebaAngleForce
setAmoebaGlobalAngleSextic simtk::openmm::openmm::AmoebaAngleForce
setAmoebaGlobalBondCubic simtk::openmm::openmm::AmoebaBondForce
setAmoebaGlobalBondQuartic simtk::openmm::openmm::AmoebaBondForce
setAmoebaGlobalInPlaneAngleCubic simtk::openmm::openmm::AmoebaInPlaneAngleForce
setAmoebaGlobalInPlaneAnglePentic simtk::openmm::openmm::AmoebaInPlaneAngleForce
setAmoebaGlobalInPlaneAngleQuartic simtk::openmm::openmm::AmoebaInPlaneAngleForce
setAmoebaGlobalInPlaneAngleSextic simtk::openmm::openmm::AmoebaInPlaneAngleForce
setAmoebaGlobalOutOfPlaneBendCubic simtk::openmm::openmm::AmoebaOutOfPlaneBendForce
setAmoebaGlobalOutOfPlaneBendPentic simtk::openmm::openmm::AmoebaOutOfPlaneBendForce
setAmoebaGlobalOutOfPlaneBendQuartic simtk::openmm::openmm::AmoebaOutOfPlaneBendForce
setAmoebaGlobalOutOfPlaneBendSextic simtk::openmm::openmm::AmoebaOutOfPlaneBendForce
setAngleParameters
simtk::openmm::openmm::CustomAngleForce.setAngleParameters() simtk::openmm::openmm::AmoebaInPlaneAngleForce.setAngleParameters() simtk::openmm::openmm::HarmonicAngleForce.setAngleParameters() simtk::openmm::openmm::AmoebaAngleForce.setAngleParameters()
setApplyThermostat simtk::openmm::openmm::RPMDIntegrator
setAwater simtk::openmm::openmm::AmoebaWcaDispersionForce
setBondParameters
simtk::openmm::openmm::AmoebaBondForce.setBondParameters() simtk::openmm::openmm::HarmonicBondForce.setBondParameters() simtk::openmm::openmm::CustomBondForce.setBondParameters() simtk::openmm::openmm::GBVIForce.setBondParameters() simtk::openmm::openmm::CustomCompoundBondForce.setBondParameters()
setBornRadiusScalingMethod simtk::openmm::openmm::GBVIForce
setBox simtk::openmm::app::charmmpsffile::CharmmPsfFile
setComputedValueParameters simtk::openmm::openmm::CustomGBForce
setConstraintParameters simtk::openmm::openmm::System
setConstraintTolerance simtk::openmm::openmm::Integrator
setCovalentMap simtk::openmm::openmm::AmoebaMultipoleForce
setCutoff simtk::openmm::openmm::AmoebaVdwForce
setCutoffDistance
simtk::openmm::openmm::CustomNonbondedForce.setCutoffDistance() simtk::openmm::openmm::CustomHbondForce.setCutoffDistance() simtk::openmm::openmm::NonbondedForce.setCutoffDistance() simtk::openmm::openmm::CustomGBForce.setCutoffDistance() simtk::openmm::openmm::GBVIForce.setCutoffDistance() simtk::openmm::openmm::AmoebaMultipoleForce.setCutoffDistance() simtk::openmm::openmm::GBSAOBCForce.setCutoffDistance() simtk::openmm::openmm::CustomManyParticleForce.setCutoffDistance()
setDefaultCollisionFrequency simtk::openmm::openmm::AndersenThermostat
setDefaultPeriodicBoxVectors simtk::openmm::openmm::System
setDefaultPressure
simtk::openmm::openmm::MonteCarloAnisotropicBarostat.setDefaultPressure() simtk::openmm::openmm::MonteCarloBarostat.setDefaultPressure() simtk::openmm::openmm::MonteCarloMembraneBarostat.setDefaultPressure()
setDefaultSurfaceTension simtk::openmm::openmm::MonteCarloMembraneBarostat
setDefaultTemperature simtk::openmm::openmm::AndersenThermostat
setDispoff simtk::openmm::openmm::AmoebaWcaDispersionForce
setDonorParameters simtk::openmm::openmm::CustomHbondForce
setDrudeFriction simtk::openmm::openmm::DrudeLangevinIntegrator
setDrudeTemperature simtk::openmm::openmm::DrudeLangevinIntegrator
setEnergyFunction
simtk::openmm::openmm::CustomAngleForce.setEnergyFunction() simtk::openmm::openmm::CustomExternalForce.setEnergyFunction() simtk::openmm::openmm::CustomTorsionForce.setEnergyFunction() simtk::openmm::openmm::CustomNonbondedForce.setEnergyFunction() simtk::openmm::openmm::CustomHbondForce.setEnergyFunction() simtk::openmm::openmm::CustomBondForce.setEnergyFunction() simtk::openmm::openmm::CustomCompoundBondForce.setEnergyFunction() simtk::openmm::openmm::CustomManyParticleForce.setEnergyFunction()
setEnergyTermParameters simtk::openmm::openmm::CustomGBForce
setEpsh simtk::openmm::openmm::AmoebaWcaDispersionForce
setEpsilonCombiningRule simtk::openmm::openmm::AmoebaVdwForce
setEpso simtk::openmm::openmm::AmoebaWcaDispersionForce
setErrorTolerance
simtk::openmm::openmm::VariableVerletIntegrator.setErrorTolerance() simtk::openmm::openmm::VariableLangevinIntegrator.setErrorTolerance()
setEwaldErrorTolerance
simtk::openmm::openmm::NonbondedForce.setEwaldErrorTolerance() simtk::openmm::openmm::AmoebaMultipoleForce.setEwaldErrorTolerance()
setExceptionParameters simtk::openmm::openmm::NonbondedForce
setExclusionParticles
simtk::openmm::openmm::CustomNonbondedForce.setExclusionParticles() simtk::openmm::openmm::CustomHbondForce.setExclusionParticles() simtk::openmm::openmm::CustomGBForce.setExclusionParticles() simtk::openmm::openmm::CustomManyParticleForce.setExclusionParticles()
setForceGroup simtk::openmm::openmm::Force
setFrequency
simtk::openmm::openmm::MonteCarloAnisotropicBarostat.setFrequency() simtk::openmm::openmm::MonteCarloBarostat.setFrequency() simtk::openmm::openmm::MonteCarloMembraneBarostat.setFrequency() simtk::openmm::openmm::CMMotionRemover.setFrequency()
setFriction
simtk::openmm::openmm::DrudeLangevinIntegrator.setFriction() simtk::openmm::openmm::RPMDIntegrator.setFriction() simtk::openmm::openmm::VariableLangevinIntegrator.setFriction() simtk::openmm::openmm::BrownianIntegrator.setFriction() simtk::openmm::openmm::LangevinIntegrator.setFriction()
setFunctionParameters
simtk::openmm::openmm::Discrete3DFunction.setFunctionParameters() simtk::openmm::openmm::Continuous3DFunction.setFunctionParameters() simtk::openmm::openmm::CustomNonbondedForce.setFunctionParameters() simtk::openmm::openmm::CustomHbondForce.setFunctionParameters() simtk::openmm::openmm::Continuous1DFunction.setFunctionParameters() simtk::openmm::openmm::CustomGBForce.setFunctionParameters() simtk::openmm::openmm::Continuous2DFunction.setFunctionParameters() simtk::openmm::openmm::Discrete2DFunction.setFunctionParameters() simtk::openmm::openmm::CustomCompoundBondForce.setFunctionParameters() simtk::openmm::openmm::Discrete1DFunction.setFunctionParameters()
setGlobalParameterDefaultValue
simtk::openmm::openmm::CustomAngleForce.setGlobalParameterDefaultValue() simtk::openmm::openmm::CustomExternalForce.setGlobalParameterDefaultValue() simtk::openmm::openmm::CustomTorsionForce.setGlobalParameterDefaultValue() simtk::openmm::openmm::CustomNonbondedForce.setGlobalParameterDefaultValue() simtk::openmm::openmm::CustomHbondForce.setGlobalParameterDefaultValue() simtk::openmm::openmm::CustomBondForce.setGlobalParameterDefaultValue() simtk::openmm::openmm::CustomGBForce.setGlobalParameterDefaultValue() simtk::openmm::openmm::CustomCompoundBondForce.setGlobalParameterDefaultValue() simtk::openmm::openmm::CustomManyParticleForce.setGlobalParameterDefaultValue()
setGlobalParameterName
simtk::openmm::openmm::CustomAngleForce.setGlobalParameterName() simtk::openmm::openmm::CustomExternalForce.setGlobalParameterName() simtk::openmm::openmm::CustomTorsionForce.setGlobalParameterName() simtk::openmm::openmm::CustomNonbondedForce.setGlobalParameterName() simtk::openmm::openmm::CustomHbondForce.setGlobalParameterName() simtk::openmm::openmm::CustomBondForce.setGlobalParameterName() simtk::openmm::openmm::CustomGBForce.setGlobalParameterName() simtk::openmm::openmm::CustomCompoundBondForce.setGlobalParameterName() simtk::openmm::openmm::CustomManyParticleForce.setGlobalParameterName()
setGlobalVariable simtk::openmm::openmm::CustomIntegrator
setGlobalVariableByName simtk::openmm::openmm::CustomIntegrator
setIncludeCavityTerm simtk::openmm::openmm::AmoebaGeneralizedKirkwoodForce
setInteractionGroupParameters simtk::openmm::openmm::CustomNonbondedForce
setKineticEnergyExpression simtk::openmm::openmm::CustomIntegrator
setMapParameters simtk::openmm::openmm::CMAPTorsionForce
setMinimizationErrorTolerance simtk::openmm::openmm::DrudeSCFIntegrator
setMultipoleParameters simtk::openmm::openmm::AmoebaMultipoleForce
setMutualInducedMaxIterations simtk::openmm::openmm::AmoebaMultipoleForce
setMutualInducedTargetEpsilon simtk::openmm::openmm::AmoebaMultipoleForce
setNonbondedMethod
simtk::openmm::openmm::CustomNonbondedForce.setNonbondedMethod() simtk::openmm::openmm::CustomHbondForce.setNonbondedMethod() simtk::openmm::openmm::NonbondedForce.setNonbondedMethod() simtk::openmm::openmm::CustomGBForce.setNonbondedMethod() simtk::openmm::openmm::GBVIForce.setNonbondedMethod() simtk::openmm::openmm::AmoebaMultipoleForce.setNonbondedMethod() simtk::openmm::openmm::AmoebaVdwForce.setNonbondedMethod() simtk::openmm::openmm::GBSAOBCForce.setNonbondedMethod() simtk::openmm::openmm::CustomManyParticleForce.setNonbondedMethod()
setOutOfPlaneBendParameters simtk::openmm::openmm::AmoebaOutOfPlaneBendForce
setParameter simtk::openmm::openmm::Context
setParticleExclusions simtk::openmm::openmm::AmoebaVdwForce
setParticleMass simtk::openmm::openmm::System
setParticleParameters
simtk::openmm::openmm::CustomExternalForce.setParticleParameters() simtk::openmm::openmm::AmoebaGeneralizedKirkwoodForce.setParticleParameters() simtk::openmm::openmm::CustomNonbondedForce.setParticleParameters() simtk::openmm::openmm::NonbondedForce.setParticleParameters() simtk::openmm::openmm::CustomGBForce.setParticleParameters() simtk::openmm::openmm::GBVIForce.setParticleParameters() simtk::openmm::openmm::DrudeForce.setParticleParameters() simtk::openmm::openmm::AmoebaWcaDispersionForce.setParticleParameters() simtk::openmm::openmm::AmoebaVdwForce.setParticleParameters() simtk::openmm::openmm::GBSAOBCForce.setParticleParameters() simtk::openmm::openmm::CustomManyParticleForce.setParticleParameters()
setPerAcceptorParameterName simtk::openmm::openmm::CustomHbondForce
setPerAngleParameterName simtk::openmm::openmm::CustomAngleForce
setPerBondParameterName
simtk::openmm::openmm::CustomBondForce.setPerBondParameterName() simtk::openmm::openmm::CustomCompoundBondForce.setPerBondParameterName()
setPerDofVariable simtk::openmm::openmm::CustomIntegrator
setPerDofVariableByName simtk::openmm::openmm::CustomIntegrator
setPerDonorParameterName simtk::openmm::openmm::CustomHbondForce
setPeriodicBoxVectors simtk::openmm::openmm::Context
setPermutationMode simtk::openmm::openmm::CustomManyParticleForce
setPerParticleParameterName
simtk::openmm::openmm::CustomExternalForce.setPerParticleParameterName() simtk::openmm::openmm::CustomNonbondedForce.setPerParticleParameterName() simtk::openmm::openmm::CustomGBForce.setPerParticleParameterName() simtk::openmm::openmm::CustomManyParticleForce.setPerParticleParameterName()
setPerTorsionParameterName simtk::openmm::openmm::CustomTorsionForce
setPiTorsionParameters simtk::openmm::openmm::AmoebaPiTorsionForce
setPmeGridDimensions simtk::openmm::openmm::AmoebaMultipoleForce
setPMEParameters simtk::openmm::openmm::NonbondedForce
setPolarizationType simtk::openmm::openmm::AmoebaMultipoleForce
setPositions
simtk::openmm::openmm::RPMDIntegrator.setPositions() simtk::openmm::openmm::Context.setPositions()
setProbeRadius simtk::openmm::openmm::AmoebaGeneralizedKirkwoodForce
setPropertyDefaultValue simtk::openmm::openmm::Platform
setPropertyValue simtk::openmm::openmm::Platform
setQuinticLowerLimitFactor simtk::openmm::openmm::GBVIForce
setQuinticUpperBornRadiusLimit simtk::openmm::openmm::GBVIForce
setRandomNumberSeed
simtk::openmm::openmm::AndersenThermostat.setRandomNumberSeed() simtk::openmm::openmm::MonteCarloAnisotropicBarostat.setRandomNumberSeed() simtk::openmm::openmm::DrudeLangevinIntegrator.setRandomNumberSeed() simtk::openmm::openmm::RPMDIntegrator.setRandomNumberSeed() simtk::openmm::openmm::MonteCarloBarostat.setRandomNumberSeed() simtk::openmm::openmm::VariableLangevinIntegrator.setRandomNumberSeed() simtk::openmm::openmm::MonteCarloMembraneBarostat.setRandomNumberSeed() simtk::openmm::openmm::BrownianIntegrator.setRandomNumberSeed() simtk::openmm::openmm::LangevinIntegrator.setRandomNumberSeed() simtk::openmm::openmm::CustomIntegrator.setRandomNumberSeed()
setReactionFieldDielectric simtk::openmm::openmm::NonbondedForce
setReciprocalSpaceForceGroup simtk::openmm::openmm::NonbondedForce
setRminh simtk::openmm::openmm::AmoebaWcaDispersionForce
setRmino simtk::openmm::openmm::AmoebaWcaDispersionForce
setScreenedPairParameters simtk::openmm::openmm::DrudeForce
setShctd simtk::openmm::openmm::AmoebaWcaDispersionForce
setSigmaCombiningRule simtk::openmm::openmm::AmoebaVdwForce
setSlevy simtk::openmm::openmm::AmoebaWcaDispersionForce
setSoluteDielectric
simtk::openmm::openmm::AmoebaGeneralizedKirkwoodForce.setSoluteDielectric() simtk::openmm::openmm::GBVIForce.setSoluteDielectric() simtk::openmm::openmm::GBSAOBCForce.setSoluteDielectric()
setSolventDielectric
simtk::openmm::openmm::AmoebaGeneralizedKirkwoodForce.setSolventDielectric() simtk::openmm::openmm::GBVIForce.setSolventDielectric() simtk::openmm::openmm::GBSAOBCForce.setSolventDielectric()
setState simtk::openmm::openmm::Context
setStepSize simtk::openmm::openmm::Integrator
setStretchBendParameters simtk::openmm::openmm::AmoebaStretchBendForce
setSurfaceAreaEnergy simtk::openmm::openmm::GBSAOBCForce
setSurfaceAreaFactor simtk::openmm::openmm::AmoebaGeneralizedKirkwoodForce
setSwitchingDistance
simtk::openmm::openmm::CustomNonbondedForce.setSwitchingDistance() simtk::openmm::openmm::NonbondedForce.setSwitchingDistance()
setTemperature
simtk::openmm::openmm::MonteCarloAnisotropicBarostat.setTemperature() simtk::openmm::openmm::DrudeLangevinIntegrator.setTemperature() simtk::openmm::openmm::RPMDIntegrator.setTemperature() simtk::openmm::openmm::MonteCarloBarostat.setTemperature() simtk::openmm::openmm::VariableLangevinIntegrator.setTemperature() simtk::openmm::openmm::MonteCarloMembraneBarostat.setTemperature() simtk::openmm::openmm::BrownianIntegrator.setTemperature() simtk::openmm::openmm::LangevinIntegrator.setTemperature()
setTime simtk::openmm::openmm::Context
setTorsionParameters
simtk::openmm::openmm::CustomTorsionForce.setTorsionParameters() simtk::openmm::openmm::RBTorsionForce.setTorsionParameters() simtk::openmm::openmm::PeriodicTorsionForce.setTorsionParameters() simtk::openmm::openmm::CMAPTorsionForce.setTorsionParameters()
setTorsionTorsionGrid simtk::openmm::openmm::AmoebaTorsionTorsionForce
setTorsionTorsionParameters simtk::openmm::openmm::AmoebaTorsionTorsionForce
setTypeFilter simtk::openmm::openmm::CustomManyParticleForce
setUnitCellDimensions simtk::openmm::app::topology::Topology
setUseDispersionCorrection
simtk::openmm::openmm::NonbondedForce.setUseDispersionCorrection() simtk::openmm::openmm::AmoebaVdwForce.setUseDispersionCorrection()
setUseLongRangeCorrection simtk::openmm::openmm::CustomNonbondedForce
setUseSwitchingFunction
simtk::openmm::openmm::CustomNonbondedForce.setUseSwitchingFunction() simtk::openmm::openmm::NonbondedForce.setUseSwitchingFunction()
setVelocities
simtk::openmm::openmm::RPMDIntegrator.setVelocities() simtk::openmm::openmm::Context.setVelocities()
setVelocitiesToTemperature simtk::openmm::openmm::Context
setVirtualSite simtk::openmm::openmm::System
setXYMode simtk::openmm::openmm::MonteCarloMembraneBarostat
setZMode simtk::openmm::openmm::MonteCarloMembraneBarostat
Simulation simtk::openmm::app::simulation
SingleParticle simtk::openmm::openmm::CustomGBForce
SinglePermutation simtk::openmm::openmm::CustomManyParticleForce
State simtk::openmm::openmm
StateDataReporter simtk::openmm::app::statedatareporter
step
simtk::openmm::openmm::Integrator.step() simtk::openmm::openmm::DrudeLangevinIntegrator.step() simtk::openmm::openmm::VariableVerletIntegrator.step() simtk::openmm::openmm::RPMDIntegrator.step() simtk::openmm::openmm::VariableLangevinIntegrator.step() simtk::openmm::openmm::BrownianIntegrator.step() simtk::openmm::openmm::LangevinIntegrator.step() simtk::openmm::openmm::VerletIntegrator.step() simtk::openmm::openmm::DrudeSCFIntegrator.step() simtk::openmm::openmm::CustomIntegrator.step() simtk::openmm::app::simulation::Simulation.step()
stepTo
simtk::openmm::openmm::VariableVerletIntegrator.stepTo() simtk::openmm::openmm::VariableLangevinIntegrator.stepTo()
supportsDoublePrecision simtk::openmm::openmm::Platform
supportsKernels simtk::openmm::openmm::Platform
SurfaceTension simtk::openmm::openmm::MonteCarloMembraneBarostat
symbol simtk::openmm::app::element::Element
system
simtk::openmm::app::simulation::Simulation.system() simtk::openmm::app::charmmpsffile::CharmmPsfFile.system()
System simtk::openmm::openmm
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