### - r -

- readParameterFile() : CharmmParameterSet
- readStreamFile() : CharmmParameterSet
- readTopologyFile() : CharmmParameterSet
- registerAtomType() : ForceField
- registerGenerator() : ForceField
- registerPlatform() : Platform
- registerResidueTemplate() : ForceField
- registerScript() : ForceField
- reinitialize() : Context
- report() : DCDReporter , PDBReporter , StateDataReporter , CheckpointReporter
- residues() : Topology , Chain