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acceptor_list simtk::openmm::app::charmmpsffile::CharmmPsfFile
add simtk::openmm::app::modeller::Modeller
addAcceptor simtk::openmm::openmm::CustomHbondForce
addAngle
simtk::openmm::openmm::CustomAngleForce.addAngle() simtk::openmm::openmm::AmoebaInPlaneAngleForce.addAngle() simtk::openmm::openmm::HarmonicAngleForce.addAngle() simtk::openmm::openmm::AmoebaAngleForce.addAngle()
addAtom simtk::openmm::app::topology::Topology
addBond
simtk::openmm::openmm::AmoebaBondForce.addBond() simtk::openmm::openmm::HarmonicBondForce.addBond() simtk::openmm::openmm::CustomBondForce.addBond() simtk::openmm::openmm::GBVIForce.addBond() simtk::openmm::openmm::CustomCompoundBondForce.addBond() simtk::openmm::app::topology::Topology.addBond()
addChain simtk::openmm::app::topology::Topology
addComputedValue simtk::openmm::openmm::CustomGBForce
addComputeGlobal simtk::openmm::openmm::CustomIntegrator
addComputePerDof simtk::openmm::openmm::CustomIntegrator
addComputeSum simtk::openmm::openmm::CustomIntegrator
addConstrainPositions simtk::openmm::openmm::CustomIntegrator
addConstraint simtk::openmm::openmm::System
addConstrainVelocities simtk::openmm::openmm::CustomIntegrator
addDonor simtk::openmm::openmm::CustomHbondForce
addEnergyTerm simtk::openmm::openmm::CustomGBForce
addException simtk::openmm::openmm::NonbondedForce
addException_usingRMin simtk::openmm::openmm::NonbondedForce
addExclusion
simtk::openmm::openmm::CustomNonbondedForce.addExclusion() simtk::openmm::openmm::CustomHbondForce.addExclusion() simtk::openmm::openmm::CustomGBForce.addExclusion() simtk::openmm::openmm::CustomManyParticleForce.addExclusion()
addExtraParticles simtk::openmm::app::modeller::Modeller
addForce simtk::openmm::openmm::System
addFunction
simtk::openmm::openmm::CustomNonbondedForce.addFunction() simtk::openmm::openmm::CustomHbondForce.addFunction() simtk::openmm::openmm::CustomGBForce.addFunction() simtk::openmm::openmm::CustomCompoundBondForce.addFunction()
addGlobalParameter
simtk::openmm::openmm::CustomAngleForce.addGlobalParameter() simtk::openmm::openmm::CustomExternalForce.addGlobalParameter() simtk::openmm::openmm::CustomTorsionForce.addGlobalParameter() simtk::openmm::openmm::CustomNonbondedForce.addGlobalParameter() simtk::openmm::openmm::CustomHbondForce.addGlobalParameter() simtk::openmm::openmm::CustomBondForce.addGlobalParameter() simtk::openmm::openmm::CustomGBForce.addGlobalParameter() simtk::openmm::openmm::CustomCompoundBondForce.addGlobalParameter() simtk::openmm::openmm::CustomManyParticleForce.addGlobalParameter()
addGlobalVariable simtk::openmm::openmm::CustomIntegrator
addHydrogens simtk::openmm::app::modeller::Modeller
addInteractionGroup simtk::openmm::openmm::CustomNonbondedForce
addMap simtk::openmm::openmm::CMAPTorsionForce
addMultipole simtk::openmm::openmm::AmoebaMultipoleForce
addOutOfPlaneBend simtk::openmm::openmm::AmoebaOutOfPlaneBendForce
addParticle
simtk::openmm::openmm::CustomExternalForce.addParticle() simtk::openmm::openmm::AmoebaGeneralizedKirkwoodForce.addParticle() simtk::openmm::openmm::CustomNonbondedForce.addParticle() simtk::openmm::openmm::NonbondedForce.addParticle() simtk::openmm::openmm::System.addParticle() simtk::openmm::openmm::CustomGBForce.addParticle() simtk::openmm::openmm::GBVIForce.addParticle() simtk::openmm::openmm::DrudeForce.addParticle() simtk::openmm::openmm::AmoebaWcaDispersionForce.addParticle() simtk::openmm::openmm::AmoebaVdwForce.addParticle() simtk::openmm::openmm::GBSAOBCForce.addParticle() simtk::openmm::openmm::CustomManyParticleForce.addParticle()
addParticle_usingRVdw simtk::openmm::openmm::NonbondedForce
addPerAcceptorParameter simtk::openmm::openmm::CustomHbondForce
addPerAngleParameter simtk::openmm::openmm::CustomAngleForce
addPerBondParameter
simtk::openmm::openmm::CustomBondForce.addPerBondParameter() simtk::openmm::openmm::CustomCompoundBondForce.addPerBondParameter()
addPerDofVariable simtk::openmm::openmm::CustomIntegrator
addPerDonorParameter simtk::openmm::openmm::CustomHbondForce
addPerParticleParameter
simtk::openmm::openmm::CustomExternalForce.addPerParticleParameter() simtk::openmm::openmm::CustomNonbondedForce.addPerParticleParameter() simtk::openmm::openmm::CustomGBForce.addPerParticleParameter() simtk::openmm::openmm::CustomManyParticleForce.addPerParticleParameter()
addPerTorsionParameter simtk::openmm::openmm::CustomTorsionForce
addPiTorsion simtk::openmm::openmm::AmoebaPiTorsionForce
addResidue simtk::openmm::app::topology::Topology
addScreenedPair simtk::openmm::openmm::DrudeForce
addSolvent simtk::openmm::app::modeller::Modeller
addStretchBend simtk::openmm::openmm::AmoebaStretchBendForce
addTabulatedFunction
simtk::openmm::openmm::CustomNonbondedForce.addTabulatedFunction() simtk::openmm::openmm::CustomHbondForce.addTabulatedFunction() simtk::openmm::openmm::CustomGBForce.addTabulatedFunction() simtk::openmm::openmm::CustomCompoundBondForce.addTabulatedFunction() simtk::openmm::openmm::CustomManyParticleForce.addTabulatedFunction()
addTorsion
simtk::openmm::openmm::CustomTorsionForce.addTorsion() simtk::openmm::openmm::RBTorsionForce.addTorsion() simtk::openmm::openmm::PeriodicTorsionForce.addTorsion() simtk::openmm::openmm::CMAPTorsionForce.addTorsion()
addTorsionTorsion simtk::openmm::openmm::AmoebaTorsionTorsionForce
addUpdateContextState simtk::openmm::openmm::CustomIntegrator
AllBonds simtk::openmm::app::forcefield
AmberInpcrdFile simtk::openmm::app::amberinpcrdfile
AmberPrmtopFile simtk::openmm::app::amberprmtopfile
AmoebaAngleForce simtk::openmm::openmm
AmoebaBondForce simtk::openmm::openmm
AmoebaGeneralizedKirkwoodForce simtk::openmm::openmm
AmoebaInPlaneAngleForce simtk::openmm::openmm
AmoebaMultipoleForce simtk::openmm::openmm
AmoebaOutOfPlaneBendForce simtk::openmm::openmm
AmoebaPiTorsionForce simtk::openmm::openmm
AmoebaStretchBendForce simtk::openmm::openmm
AmoebaTorsionTorsionForce simtk::openmm::openmm
AmoebaVdwForce simtk::openmm::openmm
AmoebaWcaDispersionForce simtk::openmm::openmm
AndersenThermostat simtk::openmm::openmm
ANGLE_FORCE_GROUP simtk::openmm::app::charmmpsffile::CharmmPsfFile
angle_list simtk::openmm::app::charmmpsffile::CharmmPsfFile
angle_types simtk::openmm::app::charmmparameterset::CharmmParameterSet
applyConstraints simtk::openmm::openmm::Context
applyVelocityConstraints simtk::openmm::openmm::Context
Atom simtk::openmm::app::topology
atom_list simtk::openmm::app::charmmpsffile::CharmmPsfFile
atom_types_int simtk::openmm::app::charmmparameterset::CharmmParameterSet
atom_types_str simtk::openmm::app::charmmparameterset::CharmmParameterSet
atom_types_tuple simtk::openmm::app::charmmparameterset::CharmmParameterSet
atomic_number simtk::openmm::app::element::Element
atomNames simtk::openmm::app::gromacsgrofile::GromacsGroFile
atomno simtk::openmm::app::charmmcrdfiles::CharmmCrdFile
atoms
simtk::openmm::app::topology::Topology.atoms() simtk::openmm::app::topology::Chain.atoms() simtk::openmm::app::topology::Residue.atoms()
attype simtk::openmm::app::charmmcrdfiles::CharmmCrdFile
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