### - p -

- parametersets : CharmmParameterSet
- ParticlePair : CustomGBForce
- ParticlePairNoExclusions : CustomGBForce
- PME : NonbondedForce , AmoebaMultipoleForce
- PolarizationCovalent11 : AmoebaMultipoleForce
- PolarizationCovalent12 : AmoebaMultipoleForce
- PolarizationCovalent13 : AmoebaMultipoleForce
- PolarizationCovalent14 : AmoebaMultipoleForce
- positions : CharmmRstFile , PDBxFile , PDBFile , Modeller , DesmondDMSFile , CharmmCrdFile , GromacsGroFile
- positionsold : CharmmRstFile
- provenance : DesmondDMSFile