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chains simtk::openmm::app::topology::Topology
close simtk::openmm::app::desmonddmsfile::DesmondDMSFile
CollisionFrequency simtk::openmm::openmm::AndersenThermostat
computeVirtualSites simtk::openmm::openmm::Context
condense simtk::openmm::app::charmmparameterset::CharmmParameterSet
convertWater simtk::openmm::app::modeller::Modeller
Copy
simtk::openmm::openmm::TabulatedFunction.Copy() simtk::openmm::openmm::Discrete3DFunction.Copy() simtk::openmm::openmm::Continuous3DFunction.Copy() simtk::openmm::openmm::Continuous1DFunction.Copy() simtk::openmm::openmm::Continuous2DFunction.Copy() simtk::openmm::openmm::Discrete2DFunction.Copy() simtk::openmm::openmm::Discrete1DFunction.Copy()
createCheckpoint simtk::openmm::openmm::Context
createDisulfideBonds simtk::openmm::app::topology::Topology
createExceptionsFromBonds simtk::openmm::openmm::NonbondedForce
createExclusionsFromBonds
simtk::openmm::openmm::CustomNonbondedForce.createExclusionsFromBonds() simtk::openmm::openmm::CustomManyParticleForce.createExclusionsFromBonds()
createStandardBonds simtk::openmm::app::topology::Topology
createSystem
simtk::openmm::app::amberprmtopfile::AmberPrmtopFile.createSystem() simtk::openmm::app::charmmpsffile::CharmmPsfFile.createSystem() simtk::openmm::app::desmonddmsfile::DesmondDMSFile.createSystem() simtk::openmm::app::forcefield::ForceField.createSystem() simtk::openmm::app::gromacstopfile::GromacsTopFile.createSystem()
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