## Changes since release 9.18

- automodel-generated PDB or mmCIF files now point to the alignment file used to generate them.

- Bundled version of HDF5 updated to 1.8.18.

- Bugfix: Whitespace in alignments aligned with gaps is now removed, not erroneously mapped to the '.' residue type.

- Bugfix: automodel should now output SSBOND and CONECT records for any disulfide bridges (previously they were present in the initial model but not the final optimized models).