#!/usr/local/bin/env python

"""
BHMM: A toolkit for Bayesian hidden Markov model analysis of single-molecule trajectories.

"""

# Define global version.
import version as _version
__version__ = _version.version

# import API
from bhmm.api import *

# hmms
from bhmm.hmm.generic_hmm import HMM
#from bhmm.hmm.gaussian_hmm import GaussianHMM
#from bhmm.hmm.discrete_hmm import DiscreteHMM

from bhmm.hmm.generic_sampled_hmm import SampledHMM
#from bhmm.hmm.gaussian_hmm import SampledGaussianHMM
#from bhmm.hmm.discrete_hmm import SampledDiscreteHMM

# estimators
from bhmm.estimators.bayesian_sampling import BayesianHMMSampler as BHMM
from bhmm.estimators.maximum_likelihood import MaximumLikelihoodEstimator as MLHMM

# output models
from bhmm.output_models import OutputModel, GaussianOutputModel, DiscreteOutputModel

# other stuff
from bhmm.util import config
from bhmm.util import testsystems
