setup.py
./bhmm/hidden/impl_c/_hidden.c
./bhmm/hidden/impl_c/hidden.c
./bhmm/msm/tmatrix_sampling.c
./bhmm/output_models/impl_c/_gaussian.c
./bhmm/output_models/impl_c/gaussian.c
bhmm/__init__.py
bhmm/api.py
bhmm/version.py
bhmm.egg-info/PKG-INFO
bhmm.egg-info/SOURCES.txt
bhmm.egg-info/dependency_links.txt
bhmm.egg-info/not-zip-safe
bhmm.egg-info/requires.txt
bhmm.egg-info/top_level.txt
bhmm/../examples/README.md
bhmm/../examples/plots.py
bhmm/../examples/discrete_1d_2min/2well_P.dat
bhmm/../examples/discrete_1d_2min/2well_energy.dat
bhmm/../examples/discrete_1d_2min/2well_traj_100K.dat
bhmm/../examples/discrete_1d_2min/run.py
bhmm/../examples/p5ab-hairpin/README.md
bhmm/../examples/p5ab-hairpin/fiber3-trace011.nc
bhmm/../examples/p5ab-hairpin/generate-figure.py
bhmm/../examples/rnase-h-d10a/README.md
bhmm/../examples/rnase-h-d10a/generate-figure.py
bhmm/../examples/rnase-h-d10a/rnase-h-d10a-trace47.nc
bhmm/../examples/rnase-h-d10a/test_mlhmm.py
bhmm/../examples/synthetic-three-state-model/generate-figure.py
bhmm/estimators/__init__.py
bhmm/estimators/bayesian_sampling.py
bhmm/estimators/maximum_likelihood.py
bhmm/hidden/__init__.py
bhmm/hidden/api.py
bhmm/hidden/impl_c/__init__.py
bhmm/hidden/impl_python/__init__.py
bhmm/hidden/impl_python/hidden.py
bhmm/hmm/__init__.py
bhmm/hmm/discrete_hmm.py
bhmm/hmm/gaussian_hmm.py
bhmm/hmm/generic_hmm.py
bhmm/hmm/generic_sampled_hmm.py
bhmm/init/__init__.py
bhmm/init/discrete.py
bhmm/init/gaussian.py
bhmm/msm/__init__.py
bhmm/msm/linalg.py
bhmm/msm/tmatrix_disconnected.py
bhmm/msm/transition_matrix_sampling_rev.py
bhmm/output_models/__init__.py
bhmm/output_models/discrete.py
bhmm/output_models/gaussian.py
bhmm/output_models/outputmodel.py
bhmm/output_models/impl_c/__init__.py
bhmm/tests/__init__.py
bhmm/tests/test_bhmm.py
bhmm/tests/test_hidden.py
bhmm/tests/test_hmm.py
bhmm/tests/test_init.py
bhmm/tests/test_mlhmm.py
bhmm/tests/test_output_gaussian.py
bhmm/tests/test_testsystems.py
bhmm/tests/data/2well_P.dat
bhmm/tests/data/2well_energy.dat
bhmm/tests/data/2well_traj_100K.dat
bhmm/util/__init__.py
bhmm/util/analysis.py
bhmm/util/config.py
bhmm/util/logger.py
bhmm/util/statistics.py
bhmm/util/testsystems.py
bhmm/util/types.py