/* +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
   Copyright (c) 2015-2020 The plumed team
   (see the PEOPLE file at the root of the distribution for a list of names)

   See http://www.plumed.org for more information.

   This file is part of plumed, version 2.

   plumed is free software: you can redistribute it and/or modify
   it under the terms of the GNU Lesser General Public License as published by
   the Free Software Foundation, either version 3 of the License, or
   (at your option) any later version.

   plumed is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU Lesser General Public License for more details.

   You should have received a copy of the GNU Lesser General Public License
   along with plumed.  If not, see <http://www.gnu.org/licenses/>.
+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ */
#ifndef __PLUMED_dimred_SMACOF_h
#define __PLUMED_dimred_SMACOF_h

#include <vector>
#include "../tools/Matrix.h"

namespace PLMD {
namespace dimred {

class SMACOF {
public:
  static double calculateSigma( const Matrix<double>& Weights, const Matrix<double>& Distances, const Matrix<double>& InitialZ, Matrix<double>& dists );
  static void run( const Matrix<double>& Weights, const Matrix<double>& Distances, const double& tol, const unsigned& maxloops, Matrix<double>& InitialZ);
};

}
}
#endif
