# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /Users/distiller/project/recipes/ncbi-amrfinderplus, last modified Mon May 12 20:10:20 2025
# ------------------------------------------------

package:
  name: ncbi-amrfinderplus
  version: 4.0.23
source:
  git_rev: amrfinder_v4.0.23
  git_url: https://github.com/ncbi/amr.git
  sha256: unused
build:
  number: '0'
  run_exports:
    - ncbi-amrfinderplus >=4.0.23,<5.0a0
  string: h3496714_0
requirements:
  build:
    - bzip2 1.0.8 h99b78c6_7
    - c-ares 1.34.5 h5505292_0
    - ca-certificates 2025.4.26 hbd8a1cb_0
    - cctools_osx-arm64 1010.6 h3b4f5d3_6
    - clang 18.1.8 default_h474c9e2_9
    - clang-18 18.1.8 default_hf90f093_9
    - clang_impl_osx-arm64 18.1.8 h2ae9ea5_24
    - clang_osx-arm64 18.1.8 h07b0088_24
    - clangxx 18.1.8 default_h1ffe849_9
    - clangxx_impl_osx-arm64 18.1.8 h555f467_24
    - clangxx_osx-arm64 18.1.8 h07b0088_24
    - compiler-rt 18.1.8 h856b3c1_1
    - compiler-rt_osx-arm64 18.1.8 h832e737_1
    - coreutils 9.5 h93a5062_0
    - git 2.49.0 pl5321hd71a902_0
    - krb5 1.21.3 h237132a_0
    - ld64_osx-arm64 951.9 hb6b49e2_6
    - libclang-cpp18.1 18.1.8 default_hf90f093_9
    - libcurl 8.13.0 h73640d1_0
    - libcxx 20.1.4 ha82da77_1
    - libcxx-devel 18.1.8 h6dc3340_8
    - libedit 3.1.20250104 pl5321hafb1f1b_0
    - libev 4.33 h93a5062_2
    - libexpat 2.7.0 h286801f_0
    - libiconv 1.18 hfe07756_1
    - libintl 0.24.1 h493aca8_0
    - libllvm18 18.1.8 default_hb458b26_5
    - liblzma 5.8.1 h39f12f2_1
    - libnghttp2 1.64.0 h6d7220d_0
    - libssh2 1.11.1 h1590b86_0
    - libxml2 2.14.2 h3e1e5eb_0
    - libzlib 1.3.1 h8359307_2
    - llvm-tools 18.1.8 default_hb458b26_5
    - llvm-tools-18 18.1.8 default_hb458b26_5
    - make 4.4.1 hc9fafa5_2
    - ncurses 6.5 h5e97a16_3
    - openssl 3.5.0 h81ee809_1
    - pcre2 10.44 ha881caa_2
    - perl 5.32.1 7_h4614cfb_perl5
    - sigtool 0.1.3 h44b9a77_0
    - tapi 1300.6.5 h03f4b80_0
    - zstd 1.5.7 h6491c7d_2
  host:
    - c-ares 1.34.5 h5505292_0
    - ca-certificates 2025.4.26 hbd8a1cb_0
    - krb5 1.21.3 h237132a_0
    - libcurl 8.13.0 h73640d1_0
    - libcxx 20.1.4 ha82da77_1
    - libedit 3.1.20250104 pl5321hafb1f1b_0
    - libev 4.33 h93a5062_2
    - libnghttp2 1.64.0 h6d7220d_0
    - libssh2 1.11.1 h1590b86_0
    - libzlib 1.3.1 h8359307_2
    - ncurses 6.5 h5e97a16_3
    - openssl 3.5.0 h81ee809_1
    - zstd 1.5.7 h6491c7d_2
  run:
    - blast >=2.9
    - curl
    - hmmer >=3.2
    - libcurl >=8.13.0,<9.0a0
    - libcxx >=18
test:
  commands:
    - echo "PREFIX=$PREFIX   CONDA_PREFIX=$CONDA_PREFIX"
    - amr_report -help
    - amrfinder_update --help
    - fasta_check -help
    - fasta2parts -help
    - gff_check -help
    - dna_mutation -help
    - amrfinder -U
    - "curl --silent \\\n -O https://raw.githubusercontent.com/ncbi/amr/master/test_dna.fa\
      \ \\\n -O https://raw.githubusercontent.com/ncbi/amr/master/test_prot.fa \\\n\
      \ -O https://raw.githubusercontent.com/ncbi/amr/master/test_prot.gff \\\n -O\
      \ https://raw.githubusercontent.com/ncbi/amr/master/test_both.expected\namrfinder\
      \ --plus -n test_dna.fa -p test_prot.fa -g test_prot.gff -O Escherichia --print_node\
      \ > test_both.got\ndiff test_both.expected test_both.got\n"
about:
  description: 'This software and the accompanying database are designed to

    find acquired antimicrobial resistance genes in bacterial protein or

    nucleotide sequences as well as known point mutations for several taxa. With

    AMRFinderPlus we have added select members of additional classes of genes

    such as virulence factors, biocide, heat, acid, and metal resistance genes.

    '
  dev_url: https://github.com/ncbi/amr
  doc_url: https://github.com/ncbi/amr/wiki
  home: https://github.com/ncbi/amr
  license: Public Domain
  license_file: LICENSE
  summary: AMRFinderPlus finds antimicrobial resistance and other genes in protein
    or nucleotide sequences.
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
  identifiers:
    - doi:10.1038/s41598-021-91456-0
  recipe-maintainers:
    - evolarjun
  skip-lints:
    - uses_vcs_url
