bin/combineMUMs
bin/delta-filter
bin/dnadiff
bin/exact-tandems
bin/mapview
bin/mgaps
bin/mummer
bin/mummerplot
bin/nucmer
bin/promer
bin/repeat-match
bin/run-mummer1
bin/run-mummer3
bin/show-aligns
bin/show-coords
bin/show-diff
bin/show-snps
bin/show-tiling
opt/mummer-3.23/ACKNOWLEDGEMENTS
opt/mummer-3.23/COPYRIGHT
opt/mummer-3.23/ChangeLog
opt/mummer-3.23/INSTALL
opt/mummer-3.23/LICENSE
opt/mummer-3.23/Makefile
opt/mummer-3.23/README
opt/mummer-3.23/annotate
opt/mummer-3.23/aux_bin/postnuc
opt/mummer-3.23/aux_bin/postpro
opt/mummer-3.23/aux_bin/prenuc
opt/mummer-3.23/aux_bin/prepro
opt/mummer-3.23/build_env_setup.sh
opt/mummer-3.23/combineMUMs
opt/mummer-3.23/conda_build.sh
opt/mummer-3.23/delta-filter
opt/mummer-3.23/dnadiff
opt/mummer-3.23/docs/Makefile
opt/mummer-3.23/docs/README
opt/mummer-3.23/docs/differences.README
opt/mummer-3.23/docs/dnadiff.README
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opt/mummer-3.23/docs/nucmer.README
opt/mummer-3.23/docs/optionman.sty
opt/mummer-3.23/docs/promer.README
opt/mummer-3.23/docs/run-mummer1.README
opt/mummer-3.23/docs/run-mummer3.README
opt/mummer-3.23/docs/skaff.sty
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opt/mummer-3.23/docs/web/MUMmer2.pdf
opt/mummer-3.23/docs/web/MUMmer3.pdf
opt/mummer-3.23/docs/web/XFiles.pdf
opt/mummer-3.23/docs/web/applications.html
opt/mummer-3.23/docs/web/compare.html
opt/mummer-3.23/docs/web/examples/data/B_anthracis_Mslice.fasta
opt/mummer-3.23/docs/web/examples/data/B_anthracis_contigs.fasta
opt/mummer-3.23/docs/web/examples/data/D_melanogaster_2Rslice.cds
opt/mummer-3.23/docs/web/examples/data/D_melanogaster_2Rslice.fasta
opt/mummer-3.23/docs/web/examples/data/D_melanogaster_2Rslice.utr
opt/mummer-3.23/docs/web/examples/data/D_pseudoobscura_contigs.fasta
opt/mummer-3.23/docs/web/examples/data/H_pylori26695_Bslice.fasta
opt/mummer-3.23/docs/web/examples/data/H_pylori26695_Eslice.fasta
opt/mummer-3.23/docs/web/examples/data/H_pyloriJ99_Bslice.fasta
opt/mummer-3.23/docs/web/examples/data/H_pyloriJ99_Eslice.fasta
opt/mummer-3.23/docs/web/examples/data/README
opt/mummer-3.23/docs/web/examples/data/mapview_0.fig
opt/mummer-3.23/docs/web/examples/data/mapview_0.pdf
opt/mummer-3.23/docs/web/examples/data/mummer.fplot
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opt/mummer-3.23/docs/web/examples/data/mummer1.out
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opt/mummer-3.23/docs/web/examples/data/mummer3.out
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opt/mummer-3.23/exact-tandems
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opt/mummer-3.23/run-mummer1
opt/mummer-3.23/run-mummer3
opt/mummer-3.23/scripts/Foundation.pm
opt/mummer-3.23/scripts/Makefile
opt/mummer-3.23/scripts/dnadiff.pl
opt/mummer-3.23/scripts/exact-tandems.csh
opt/mummer-3.23/scripts/mapview.pl
opt/mummer-3.23/scripts/mummerplot.pl
opt/mummer-3.23/scripts/nucmer.pl
opt/mummer-3.23/scripts/nucmer.pl.~1.5.~
opt/mummer-3.23/scripts/nucmer2xfig.pl
opt/mummer-3.23/scripts/promer.pl
opt/mummer-3.23/scripts/run-mummer1.csh
opt/mummer-3.23/scripts/run-mummer3.csh
opt/mummer-3.23/scripts/tandem-repeat.awk
opt/mummer-3.23/show-aligns
opt/mummer-3.23/show-coords
opt/mummer-3.23/show-diff
opt/mummer-3.23/show-snps
opt/mummer-3.23/show-tiling
opt/mummer-3.23/src/kurtz/Makedef
opt/mummer-3.23/src/kurtz/Makefile
opt/mummer-3.23/src/kurtz/README
opt/mummer-3.23/src/kurtz/Splintoptions
opt/mummer-3.23/src/kurtz/libbasedir/Cuthere.awk
opt/mummer-3.23/src/kurtz/libbasedir/Dependencies.mf
opt/mummer-3.23/src/kurtz/libbasedir/Excludemulti
opt/mummer-3.23/src/kurtz/libbasedir/Filegoals.mf
opt/mummer-3.23/src/kurtz/libbasedir/Filelists.mf
opt/mummer-3.23/src/kurtz/libbasedir/Importfiles
opt/mummer-3.23/src/kurtz/libbasedir/Makefile
opt/mummer-3.23/src/kurtz/libbasedir/Mkprotodef.sh
opt/mummer-3.23/src/kurtz/libbasedir/Mksrc.sh
opt/mummer-3.23/src/kurtz/libbasedir/README
opt/mummer-3.23/src/kurtz/libbasedir/args.h
opt/mummer-3.23/src/kurtz/libbasedir/arraydef.h
opt/mummer-3.23/src/kurtz/libbasedir/chardef.h
opt/mummer-3.23/src/kurtz/libbasedir/cleanMUMcand.c
opt/mummer-3.23/src/kurtz/libbasedir/clock.c
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opt/mummer-3.23/src/kurtz/libbasedir/libbase.a
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opt/mummer-3.23/src/kurtz/libbasedir/optdesc.h
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opt/mummer-3.23/src/kurtz/libbasedir/protodef.h
opt/mummer-3.23/src/kurtz/libbasedir/safescpy.c
opt/mummer-3.23/src/kurtz/libbasedir/seterror.c
opt/mummer-3.23/src/kurtz/libbasedir/space.c
opt/mummer-3.23/src/kurtz/libbasedir/spacedef.h
opt/mummer-3.23/src/kurtz/libbasedir/types.h
opt/mummer-3.23/src/kurtz/libbasedir/visible.h
opt/mummer-3.23/src/kurtz/mm3src/Dependencies.mf
opt/mummer-3.23/src/kurtz/mm3src/Filegoals.mf
opt/mummer-3.23/src/kurtz/mm3src/Makefile
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opt/mummer-3.23/src/kurtz/mm3src/maxmat3.c
opt/mummer-3.23/src/kurtz/mm3src/maxmatdef.h
opt/mummer-3.23/src/kurtz/mm3src/maxmatinp.c
opt/mummer-3.23/src/kurtz/mm3src/maxmatopt.c
opt/mummer-3.23/src/kurtz/mm3src/procmaxmat.c
opt/mummer-3.23/src/kurtz/streesrc/Dependencies.mf
opt/mummer-3.23/src/kurtz/streesrc/Filegoals.mf
opt/mummer-3.23/src/kurtz/streesrc/Macronames
opt/mummer-3.23/src/kurtz/streesrc/Makefile
opt/mummer-3.23/src/kurtz/streesrc/Mkstreeproto.sh
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opt/mummer-3.23/src/kurtz/streesrc/dfs.gen
opt/mummer-3.23/src/kurtz/streesrc/ex2leav.c
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opt/mummer-3.23/src/kurtz/streesrc/libstree.a
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opt/mummer-3.23/src/kurtz/streesrc/symboldef.h
opt/mummer-3.23/src/tigr/Makefile
opt/mummer-3.23/src/tigr/annotate.cc
opt/mummer-3.23/src/tigr/combineMUMs.cc
opt/mummer-3.23/src/tigr/delta-filter.cc
opt/mummer-3.23/src/tigr/delta.cc
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opt/mummer-3.23/src/tigr/gaps.cc
opt/mummer-3.23/src/tigr/mgaps.cc
opt/mummer-3.23/src/tigr/postnuc.cc
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opt/mummer-3.23/src/tigr/repeat-match.cc
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opt/mummer-3.23/src/tigr/show-coords.cc
opt/mummer-3.23/src/tigr/show-diff.cc
opt/mummer-3.23/src/tigr/show-snps.cc
opt/mummer-3.23/src/tigr/show-tiling.cc
opt/mummer-3.23/src/tigr/sw_align.cc
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opt/mummer-3.23/src/tigr/translate.cc
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