recipe_sha: f4aa3231ab1c4e15da5249dbaef728ceb38c17470010c24e709b3d504b746c81  # The hash of the recipe's meta.yaml at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |2-
      - zlib
      - libcxx >=18
  test:
    commands:
      - diamond --help 2>&1 > /dev/null
  about:
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/api.py", line 209, in build
      return build_tree(
    home: http://ab.inf.uni-tuebingen.de/software/diamond/
    license: BSD
    summary: Accelerated BLAST compatible local sequence aligner
  extra:
    copy_test_source_files: true
    final: true
    identifiers:
      - biotools:Diamond
      - doi:10.1038/nmeth.3176


    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 3712, in build_tree
      packages_from_this = build(
    File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 2566, in build
      raise BuildScriptException(str(exc), caused_by=exc) from exc
  conda_build.exceptions.BuildScriptException: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/diamond_1734455678405/work/conda_build.sh']' returned non-zero exit status 2.
  source tree in: /opt/mambaforge/envs/bioconda/conda-bld/diamond_1734455678405/work
  export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/diamond_1734455678405/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh
  export BUILD_PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/diamond_1734455678405/_build_env
  export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/diamond_1734455678405/work
  INFO: activate_clang_osx-64.sh made the following environmental changes:
  AR=x86_64-apple-darwin13.4.0-ar
  AS=x86_64-apple-darwin13.4.0-as
  CC=x86_64-apple-darwin13.4.0-clang
  CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
  CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/diamond-0.8.36 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
  CHECKSYMS=x86_64-apple-darwin13.4.0-checksyms
  CLANG=x86_64-apple-darwin13.4.0-clang
  CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.13 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
  CMAKE_PREFIX_PATH=:$PREFIX
  CONDA_TOOLCHAIN_BUILD=x86_64-apple-darwin13.4.0
  CONDA_TOOLCHAIN_HOST=x86_64-apple-darwin13.4.0
  CPP=x86_64-apple-darwin13.4.0-clang-cpp
  CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.13
  CPP_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang-cpp
  DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/diamond-0.8.36 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
  HOST=x86_64-apple-darwin13.4.0
  INSTALL_NAME_TOOL=x86_64-apple-darwin13.4.0-install_name_tool
  LD=x86_64-apple-darwin13.4.0-ld
  LDFLAGS=-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib
  LDFLAGS_LD=-headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib
  LIBTOOL=x86_64-apple-darwin13.4.0-libtool
  LIPO=x86_64-apple-darwin13.4.0-lipo
  MESON_ARGS=-Dbuildtype=release --prefix=$PREFIX -Dlibdir=lib
  NM=x86_64-apple-darwin13.4.0-nm
  NMEDIT=x86_64-apple-darwin13.4.0-nmedit
  OBJC=x86_64-apple-darwin13.4.0-clang
  OBJC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
  OTOOL=x86_64-apple-darwin13.4.0-otool
  PAGESTUFF=x86_64-apple-darwin13.4.0-pagestuff
  RANLIB=x86_64-apple-darwin13.4.0-ranlib
  REDO_PREBINDING=x86_64-apple-darwin13.4.0-redo_prebinding
  SDKROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk
  SEGEDIT=x86_64-apple-darwin13.4.0-segedit
  SEG_ADDR_TABLE=x86_64-apple-darwin13.4.0-seg_addr_table
  SEG_HACK=x86_64-apple-darwin13.4.0-seg_hack
  SIZE=x86_64-apple-darwin13.4.0-size
  STRINGS=x86_64-apple-darwin13.4.0-strings
  STRIP=x86_64-apple-darwin13.4.0-strip
  _CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0
  ac_cv_func_malloc_0_nonnull=yes
  ac_cv_func_realloc_0_nonnull=yes
  build_alias=x86_64-apple-darwin13.4.0
  host_alias=x86_64-apple-darwin13.4.0
  INFO: activate_clangxx_osx-64.sh made the following environmental changes:
  CLANGXX=x86_64-apple-darwin13.4.0-clang
  CXX=x86_64-apple-darwin13.4.0-clang
  CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/diamond-0.8.36 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
  CXX_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
  DEBUG_CXXFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -stdlib=libc -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/diamond-0.8.36 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
  -- The C compiler identification is Clang 18.1.8
  -- The CXX compiler identification is Clang 18.1.8
  -- Detecting C compiler ABI info
  -- Detecting C compiler ABI info - done
  -- Check for working C compiler: $BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang - skipped
  -- Detecting C compile features
  -- Detecting C compile features - done
  -- Detecting CXX compiler ABI info
  -- Detecting CXX compiler ABI info - done
  -- Check for working CXX compiler: $BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang - skipped
  -- Detecting CXX compile features
  -- Detecting CXX compile features - done
  -- Performing Test COMPILER_SUPPORTS_MARCHNATIVE
  -- Performing Test COMPILER_SUPPORTS_MARCHNATIVE - Success
  -- Found ZLIB: $PREFIX/lib/libz.dylib (found version "1.3.1")
  -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
  -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
  -- Found Threads: TRUE
  -- Configuring done (3.3s)
  -- Generating done (0.1s)
  -- Build files have been written to: $SRC_DIR/build
  [  1%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o
# Last 100 lines of the build log.
category: |-
  compiler error
