Package: bluster
Version: 1.16.0
Date: 2024-09-05
Title: Clustering Algorithms for Bioconductor
Description: 
    Wraps common clustering algorithms in an easily extended S4 framework.
    Backends are implemented for hierarchical, k-means and graph-based clustering.
    Several utilities are also provided to compare and evaluate clustering results.
Authors@R: 
    c(
        person("Aaron", "Lun", role = c("aut", "cre"), email = "infinite.monkeys.with.keyboards@gmail.com"),
        person("Stephanie", "Hicks", role="ctb"),
        person("Basil", "Courbayre", role="ctb"),
        person("Tuomas", "Borman", role="ctb"),
        person("Leo", "Lahti", role="ctb")
    )
Imports: stats, methods, utils, cluster, Matrix, Rcpp, igraph,
        S4Vectors, BiocParallel, BiocNeighbors
Suggests: knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut,
        scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans,
        kohonen, apcluster, DirichletMultinomial, vegan, fastcluster
biocViews: ImmunoOncology, Software, GeneExpression, Transcriptomics,
        SingleCell, Clustering
LinkingTo: Rcpp, assorthead
Collate: AllClasses.R AllGenerics.R AgnesParam.R approxSilhouette.R
        bluster-package.R DbscanParam.R DianaParam.R AffinityParam.R
        BlusterParam.R bootstrapStability.R ClaraParam.R clusterRMSD.R
        clusterSweep.R compareClusterings.R DmmParam.R
        FixedNumberParam.R HclustParam.R HierarchicalParam.R
        KmeansParam.R linkClusters.R makeSNNGraph.R MbkmeansParam.R
        mergeCommunities.R neighborPurity.R nestedClusters.R
        NNGraphParam.R pairwiseModularity.R pairwiseRand.R PamParam.R
        RcppExports.R SomParam.R TwoStepParam.R utils.R
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
SystemRequirements: C++17
RoxygenNote: 7.3.2
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/bluster
git_branch: RELEASE_3_20
git_last_commit: 32aa5ea
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
Packaged: 2024-10-29 23:48:19 UTC; biocbuild
Author: Aaron Lun [aut, cre],
  Stephanie Hicks [ctb],
  Basil Courbayre [ctb],
  Tuomas Borman [ctb],
  Leo Lahti [ctb]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
Built: R 4.4.3; aarch64-apple-darwin20.0.0; 2025-04-21 22:16:38 UTC; unix
