# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /Users/distiller/project/recipes/atlas, last modified Fri Jan 10 17:29:11 2025
# ------------------------------------------------

package:
  name: atlas
  version: 2.0.0
source:
  sha256: 1a633dc1ed74de184524787f861ccacad14213b0a341492fa02c7c5c82cea766
  url: https://bitbucket.org/wegmannlab/atlas/get/2.0.0-rc.7.tar.gz
build:
  number: '2'
  run_exports:
    - atlas >=2.0.0,<3.0a0
  string: h4d512d1_2
requirements:
  build:
    - bzip2 1.0.8 h99b78c6_7
    - c-ares 1.34.4 h5505292_0
    - ca-certificates 2024.12.14 hf0a4a13_0
    - cctools_osx-arm64 1010.6 h908b477_2
    - clang 18.1.8 default_h675cc0c_5
    - clang-18 18.1.8 default_h5c12605_5
    - clang_impl_osx-arm64 18.1.8 h2ae9ea5_23
    - clang_osx-arm64 18.1.8 h07b0088_23
    - clangxx 18.1.8 default_h675cc0c_5
    - clangxx_impl_osx-arm64 18.1.8 h555f467_23
    - clangxx_osx-arm64 18.1.8 h07b0088_23
    - cmake 3.31.2 ha25475f_1
    - compiler-rt 18.1.8 h856b3c1_1
    - compiler-rt_osx-arm64 18.1.8 h832e737_1
    - git 2.47.1 pl5321hd71a902_0
    - icu 75.1 hfee45f7_0
    - krb5 1.21.3 h237132a_0
    - ld64_osx-arm64 951.9 hfc0fa09_2
    - libclang-cpp18.1 18.1.8 default_h5c12605_5
    - libcurl 8.11.1 h73640d1_0
    - libcxx 19.1.6 ha82da77_1
    - libcxx-devel 18.1.8 h6dc3340_7
    - libedit 3.1.20240808 pl5321hafb1f1b_0
    - libev 4.33 h93a5062_2
    - libexpat 2.6.4 h286801f_0
    - libiconv 1.17 h0d3ecfb_2
    - libintl 0.22.5 h8414b35_3
    - libllvm18 18.1.8 h5090b49_2
    - liblzma 5.6.3 h39f12f2_1
    - libnghttp2 1.64.0 h6d7220d_0
    - libssh2 1.11.1 h9cc3647_0
    - libuv 1.49.2 h7ab814d_0
    - libxml2 2.13.5 h178c5d8_1
    - libzlib 1.3.1 h8359307_2
    - llvm-tools 18.1.8 h5090b49_2
    - llvm-tools-18 18.1.8 h5090b49_2
    - ncurses 6.5 h7bae524_1
    - ninja 1.12.1 h420ef59_0
    - openssl 3.4.0 h81ee809_1
    - pcre2 10.44 h297a79d_2
    - perl 5.32.1 7_h4614cfb_perl5
    - rhash 1.4.5 h7ab814d_0
    - sigtool 0.1.3 h44b9a77_0
    - tapi 1300.6.5 h03f4b80_0
    - zstd 1.5.6 hb46c0d2_0
  host:
    - armadillo 14.2.2 h925db70_0
    - arpack 3.9.1 nompi_h1f29f7c_102
    - bzip2 1.0.8 h99b78c6_7
    - c-ares 1.34.4 h5505292_0
    - ca-certificates 2024.12.14 hf0a4a13_0
    - fmt 10.2.1 h2ffa867_0
    - htslib 1.21 hfcd771d_1
    - jsoncpp 1.9.6 h726d253_1
    - krb5 1.21.3 h237132a_0
    - lapack 3.9.0 netlib
    - libblas 3.9.0 26_osxarm64_openblas
    - libcblas 3.9.0 26_osxarm64_openblas
    - libcurl 8.11.1 h73640d1_0
    - libcxx 19.1.6 ha82da77_1
    - libdeflate 1.22 hd74edd7_0
    - libedit 3.1.20240808 pl5321hafb1f1b_0
    - libev 4.33 h93a5062_2
    - libgfortran 5.0.0 13_2_0_hd922786_3
    - libgfortran5 13.2.0 hf226fd6_3
    - liblapack 3.9.0 26_osxarm64_openblas
    - liblzma 5.6.3 h39f12f2_1
    - libnghttp2 1.64.0 h6d7220d_0
    - libopenblas 0.3.28 openmp_hf332438_1
    - libssh2 1.11.1 h9cc3647_0
    - libzlib 1.3.1 h8359307_2
    - llvm-openmp 18.1.8 hde57baf_1
    - ncurses 6.5 h7bae524_1
    - nlohmann_json 3.11.3 h00cdb27_1
    - openblas 0.3.28 openmp_hea878ba_1
    - openssl 3.4.0 h81ee809_1
    - superlu 5.2.2 hc615359_0
    - zlib 1.3.1 h8359307_2
    - zstd 1.5.6 hb46c0d2_0
  run:
    - armadillo >=14.2,<15.0a0
    - fmt >=10.2.1,<11.0a0
    - htslib >=1.21,<1.22.0a0
    - jsoncpp >=1.9.6,<1.9.7.0a0
    - lapack
    - libcxx >=18
    - libzlib >=1.3.1,<2.0a0
    - llvm-openmp >=18.1.8
    - nlohmann_json
    - openblas
test:
  commands:
    - atlas | grep "successfully"
    - atlas simulate
    - atlas HKY85 --bam ATLAS_simulations.bam --fasta ATLAS_simulations.fasta
    - atlas GLF --bam ATLAS_simulations.bam
    - atlas saf --glf ATLAS_simulations.glf.gz --fasta ATLAS_simulations.fasta
    - atlas majorMinor --glf ATLAS_simulations.glf.gz
    - rm ATLAS_* *.parameters saf.saf.* || exit 1
about:
  home: https://atlaswiki.netlify.app
  license: MPL-2.0
  summary: 'ATLAS: Analysis Tools for Ancient and Low-depth Samples'
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
