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exterior_loops.h
Go to the documentation of this file.
1 #ifndef VIENNA_RNA_PACKAGE_EXTERIOR_LOOPS_H
2 #define VIENNA_RNA_PACKAGE_EXTERIOR_LOOPS_H
3
4 #include <ViennaRNA/data_structures.h>
5 #include <ViennaRNA/params.h>
6
34 int E_ExtLoop(int type,
35 int si1,
36 int sj1,
37 vrna_param_t *P);
38
44 FLT_OR_DBL exp_E_ExtLoop( int type,
45 int si1,
46 int sj1,
47 vrna_exp_param_t *P);
48
94 int E_Stem( int type,
95 int si1,
96 int sj1,
97 int extLoop,
98 vrna_param_t *P);
99
108 FLT_OR_DBL exp_E_Stem(int type,
109 int si1,
110 int sj1,
111 int extLoop,
112 vrna_exp_param_t *P);
113
114
115 int
116 E_ext_loop( int i,
117 int j,
118 vrna_fold_compound_t *vc);
119
120 void
121 E_ext_loop_5( vrna_fold_compound_t *vc);
122
123 int
124 vrna_BT_ext_loop_f5(vrna_fold_compound_t *vc,
125 int *k,
126 int *i,
127 int *j,
128 vrna_bp_stack_t *bp_stack,
129 int *stack_count);
130
136 #endif
FLT_OR_DBL
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: data_structures.h:39
vrna_fc_s
The most basic data structure required by many functions throughout the RNAlib.
Definition: data_structures.h:424
vrna_param_s
The datastructure that contains temperature scaled energy parameters.
Definition: params.h:50
E_ExtLoop
int E_ExtLoop(int type, int si1, int sj1, vrna_param_t *P)
exp_E_Stem
FLT_OR_DBL exp_E_Stem(int type, int si1, int sj1, int extLoop, vrna_exp_param_t *P)
data_structures.h
params.h
vrna_exp_param_s
The datastructure that contains temperature scaled Boltzmann weights of the energy parameters...
Definition: params.h:94
vrna_bp_stack_s
Base pair stack element.
Definition: data_structures.h:192
E_Stem
int E_Stem(int type, int si1, int sj1, int extLoop, vrna_param_t *P)
exp_E_ExtLoop
FLT_OR_DBL exp_E_ExtLoop(int type, int si1, int sj1, vrna_exp_param_t *P)