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profiledist.h
Go to the documentation of this file.
1 #ifndef VIENNA_RNA_PACKAGE_PROFILEDIST_H
2 #define VIENNA_RNA_PACKAGE_PROFILEDIST_H
3
4 #ifdef DEPRECATION_WARNINGS
5 # ifdef __GNUC__
6 # define DEPRECATED(func) func __attribute__ ((deprecated))
7 # else
8 # define DEPRECATED(func) func
9 # endif
10 #else
11 # define DEPRECATED(func) func
12 #endif
13
14 #include <ViennaRNA/data_structures.h>
15
24 float profile_edit_distance(const float *T1,
25 const float *T2);
26
37 float *Make_bp_profile_bppm(FLT_OR_DBL *bppm,
38 int length);
39
43 void print_bppm(const float *T);
44
50 void free_profile(float *T);
51
60 DEPRECATED(float *Make_bp_profile(int length));
61
62 #endif
profile_edit_distance
float profile_edit_distance(const float *T1, const float *T2)
Align the 2 probability profiles T1, T2 .
free_profile
void free_profile(float *T)
free space allocated in Make_bp_profile
FLT_OR_DBL
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: data_structures.h:39
data_structures.h
Make_bp_profile_bppm
float * Make_bp_profile_bppm(FLT_OR_DBL *bppm, int length)
condense pair probability matrix into a vector containing probabilities for unpaired, upstream paired and downstream paired.
Make_bp_profile
float * Make_bp_profile(int length)
print_bppm
void print_bppm(const float *T)
print string representation of probability profile