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PS_dot.h
Go to the documentation of this file.
1 #ifndef VIENNA_RNA_PACKAGE_PS_DOT_H
2 #define VIENNA_RNA_PACKAGE_PS_DOT_H
3
4 #include <ViennaRNA/data_structures.h>
5 #include <ViennaRNA/plot_structure.h>
6 #include <ViennaRNA/plot_aln.h>
7
8 #ifdef DEPRECATION_WARNINGS
9 # ifdef __GNUC__
10 # define DEPRECATED(func) func __attribute__ ((deprecated))
11 # else
12 # define DEPRECATED(func) func
13 # endif
14 #else
15 # define DEPRECATED(func) func
16 #endif
17
18 /* make this interface backward compatible with RNAlib < 2.2.0 */
19 #define VRNA_BACKWARD_COMPAT
20
31 int PS_color_dot_plot(char *string,
32 cpair *pi,
33 char *filename);
34
35 int PS_color_dot_plot_turn( char *seq,
36 cpair *pi,
37 char *filename,
38 int winSize);
39
59 int PS_dot_plot_list( char *seq,
60 char *filename,
61 plist *pl,
62 plist *mf,
63 char *comment);
64
65 int vrna_plot_dp_PS_list( char *seq,
66 int cp,
67 char *wastlfile,
68 plist *pl,
69 plist *mf,
70 char *comment);
71
72 int PS_dot_plot_turn( char *seq,
73 plist *pl,
74 char *filename,
75 int winSize);
76
77 #ifdef VRNA_BACKWARD_COMPAT
78
94 DEPRECATED(int PS_dot_plot( char *string,
95 char *file));
96
97 #endif
98
103 #endif
vrna_cpair_s
this datastructure is used as input parameter in functions of PS_dot.c
Definition: data_structures.h:174
PS_dot_plot
int PS_dot_plot(char *string, char *file)
Produce postscript dot-plot.
data_structures.h
plot_aln.h
Various functions for plotting Sequence / Structure Alignments.
plot_structure.h
Various functions for plotting RNA secondary structures.
vrna_plist_s
this datastructure is used as input parameter in functions of PS_dot.h and others ...
Definition: data_structures.h:164
PS_dot_plot_list
int PS_dot_plot_list(char *seq, char *filename, plist *pl, plist *mf, char *comment)
Produce a postscript dot-plot from two pair lists.