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svm_utils.h
1 #ifndef VIENNA_RNA_PACKAGE_SUBOPT_H
2 #define VIENNA_RNA_PACKAGE_SUBOPT_H
3
4 #include "svm.h"
5
6 extern char *avg_model_string;
7 extern char *sd_model_string;
8
9 float get_z(char *sequence,
10 double energy);
11 double avg_regression (int N,
12 int A,
13 int C,
14 int G,
15 int T,
16 struct svm_model *avg_model,
17 int *info );
18 double sd_regression (int N,
19 int A,
20 int C,
21 int G,
22 int T,
23 struct svm_model *sd_model);
24 double minimal_sd (int N,
25 int A,
26 int C,
27 int G,
28 int T);
29 struct svm_model *svm_load_model_string(char *modelString);
30 int *get_seq_composition( short *S,
31 unsigned int start,
32 unsigned int stop,
33 unsigned int length);
34
35 #endif