var NAVTREE =
[
  [ "RNAlib-2.2.5", "index.html", [
    [ "ViennaRNA Package core - RNAlib", "index.html", [
      [ "Introduction", "index.html#mp_intro", null ]
    ] ],
    [ "Parsing and Comparing - Functions to Manipulate Structures", "mp_parse.html", null ],
    [ "Utilities - Odds and Ends", "mp_utils.html", [
      [ "Producing secondary structure graphs", "mp_utils.html#utils_ss", null ],
      [ "Producing (colored) dot plots for base pair probabilities", "mp_utils.html#utils_dot", null ],
      [ "Producing (colored) alignments", "mp_utils.html#utils_aln", null ],
      [ "RNA sequence related utilities", "mp_utils.html#utils_seq", null ],
      [ "RNA secondary structure related utilities", "mp_utils.html#utils_struc", null ],
      [ "Miscellaneous Utilities", "mp_utils.html#utils_misc", null ]
    ] ],
    [ "RNAlib API v3.0", "newAPI.html", [
      [ "Introduction", "newAPI.html#newAPI_intro", null ],
      [ "What are the major changes?", "newAPI.html#newAPI_changes", null ],
      [ "How to port your program to the new API", "newAPI.html#newAPI_porting", null ],
      [ "Some Examples using RNAlib API v3.0", "newAPI.html#newAPI_examples", null ]
    ] ],
    [ "Scripting Language interface(s)", "swig_interface.html", [
      [ "Introduction", "swig_interface.html#swig_intro", [
        [ "Function renaming scheme", "swig_interface.html#swig_renaming", null ],
        [ "Object oriented Interface for data structures", "swig_interface.html#swig_oo_interface", null ]
      ] ],
      [ "Examples", "swig_interface.html#swig_examples", [
        [ "Perl Examples", "swig_interface.html#swig_perl_examples", [
          [ "Using the Flat Interface", "swig_interface.html#swig_perl_examples_flat", null ],
          [ "Using the Object Oriented (OO) Interface", "swig_interface.html#swig_perl_examples_oo", null ]
        ] ],
        [ "Python Examples", "swig_interface.html#swig_python_examples", null ]
      ] ]
    ] ],
    [ "Input / Output File Formats", "file_formats.html", [
      [ "File formats for Secondary Structure Constraints", "file_formats.html#constraint-formats", [
        [ "Constraints Definition File", "file_formats.html#constraint-formats-file", [
          [ "Constraint commands", "file_formats.html#const_file_commands", null ],
          [ "Specification of the loop type context", "file_formats.html#const_file_loop_types", null ],
          [ "Controlling the orientation of base pairing", "file_formats.html#const_file_orientation", null ],
          [ "Sequence coordinates", "file_formats.html#const_file_seq_coords", null ],
          [ "Valid constraint commands", "file_formats.html#const_file_syntax", null ]
        ] ]
      ] ]
    ] ],
    [ "Example - A Small Example Program", "mp_example.html", null ],
    [ "Deprecated List", "deprecated.html", null ],
    [ "Bug List", "bug.html", null ],
    [ "Bibliography", "citelist.html", null ],
    [ "Modules", "modules.html", "modules" ],
    [ "Data Structures", null, [
      [ "Data Structures", "annotated.html", "annotated" ],
      [ "Data Structure Index", "classes.html", null ],
      [ "Data Fields", "functions.html", [
        [ "All", "functions.html", null ],
        [ "Variables", "functions_vars.html", null ]
      ] ]
    ] ],
    [ "Files", null, [
      [ "File List", "files.html", "files" ],
      [ "Globals", "globals.html", [
        [ "All", "globals.html", "globals_dup" ],
        [ "Functions", "globals_func.html", "globals_func" ],
        [ "Variables", "globals_vars.html", null ],
        [ "Typedefs", "globals_type.html", null ],
        [ "Enumerations", "globals_enum.html", null ],
        [ "Enumerator", "globals_eval.html", null ],
        [ "Macros", "globals_defs.html", null ]
      ] ]
    ] ]
  ] ]
];

var NAVTREEINDEX =
[
"1_88_84__epars_8h.html",
"group__consensus__pf__fold.html",
"group__energy__parameters__convert.html#ga0d4e8a836bb4864ab5129c085dbf592d",
"group__hard__constraints.html#ga696dcf77887d856c6f21ea266d8b9ca2",
"group__mfe__cofold.html#gafee0c32208aa2ac97338b6e3fbad7fa5",
"group__model__details.html#gafb1ef1166da85092ae8a325e02dcae71",
"group__struct__utils.html#ga6341cbb704924824e0236c1dce791032",
"profiledist_8h.html#a8e0b4fe3698b3502945116ecc0ba6160"
];

var SYNCONMSG = 'click to disable panel synchronisation';
var SYNCOFFMSG = 'click to enable panel synchronisation';