Lfold.h
Go to the documentation of this file.
#ifndef VIENNA_RNA_PACKAGE_LFOLD_H
#define VIENNA_RNA_PACKAGE_LFOLD_H
/* make this interface backward compatible with RNAlib < 2.2.0 */
#define VRNA_BACKWARD_COMPAT
#ifdef DEPRECATION_WARNINGS
# ifdef __GNUC__
# define DEPRECATED(func) func __attribute__ ((deprecated))
# else
# define DEPRECATED(func) func
# endif
#else
# define DEPRECATED(func) func
#endif
#include <ViennaRNA/mfe.h>
float
vrna_Lfold( const char *string,
int window_size,
FILE *file);
#ifdef USE_SVM
float
vrna_Lfoldz(const char *string,
int window_size,
double min_z,
FILE *file);
#endif
float aliLfold( const char **strings,
char *structure,
int maxdist);
#ifdef VRNA_BACKWARD_COMPAT
DEPRECATED(float Lfold(const char *string, char *structure, int maxdist));
DEPRECATED(float Lfoldz(const char *string, char *structure, int maxdist, int zsc, double min_z));
#endif
#endif
aliLfold
float aliLfold(const char **strings, char *structure, int maxdist)
Lfoldz
float Lfoldz(const char *string, char *structure, int maxdist, int zsc, double min_z)
vrna_Lfoldz
float vrna_Lfoldz(const char *string, int window_size, double min_z, FILE *file)
Local MFE prediction using a sliding window approach with z-score cut-off (simplified interface) ...
mfe.h
MFE calculations for single RNA sequences.
vrna_Lfold
float vrna_Lfold(const char *string, int window_size, FILE *file)
Local MFE prediction using a sliding window approach (simplified interface)
Lfold
float Lfold(const char *string, char *structure, int maxdist)
The local analog to fold().