dist_vars.h
Go to the documentation of this file.
#ifndef VIENNA_RNA_PACKAGE_DIST_VARS_H
#define VIENNA_RNA_PACKAGE_DIST_VARS_H
extern int edit_backtrack;
extern char *aligned_line[4];
extern int cost_matrix;
/* Global type defs for Distance-Package */
typedef struct {
int type;
int weight;
int father;
int sons;
int leftmostleaf;
} Postorder_list;
typedef struct {
Postorder_list *postorder_list;
int *keyroots;
} Tree;
typedef struct {
int type;
int sign;
float weight;
} swString;
#endif
edit_backtrack
int edit_backtrack
Produce an alignment of the two structures being compared by tracing the editing path giving the mini...
swString
Definition: dist_vars.h:46
cost_matrix
int cost_matrix
Specify the cost matrix to be used for distance calculations.
aligned_line
char * aligned_line[4]
Contains the two aligned structures after a call to one of the distance functions with edit_backtrack...
Tree
Definition: dist_vars.h:41
Postorder_list
Definition: dist_vars.h:33