var model_8h =
[
    [ "VRNA_MODEL_DEFAULT_TEMPERATURE", "group__model__details.html#gaf47f9850b3b4763479f7a7e7a15648a2", null ],
    [ "VRNA_MODEL_DEFAULT_PF_SCALE", "group__model__details.html#ga5505389cba74a18bbc116d2bb20256fa", null ],
    [ "VRNA_MODEL_DEFAULT_BETA_SCALE", "group__model__details.html#ga383d3ac8d08c3b6221754b50871c1200", null ],
    [ "VRNA_MODEL_DEFAULT_DANGLES", "group__model__details.html#ga2aa7bc2cae774b83a5c468f824c27a42", null ],
    [ "VRNA_MODEL_DEFAULT_SPECIAL_HP", "group__model__details.html#gabd1ab224e1048defd45c165ed7d1c108", null ],
    [ "VRNA_MODEL_DEFAULT_NO_LP", "group__model__details.html#gab72462726dd60ed0d43339bbf7ee08ad", null ],
    [ "VRNA_MODEL_DEFAULT_NO_GU", "group__model__details.html#ga34702f7d14d38b877ba8e475281e97e2", null ],
    [ "VRNA_MODEL_DEFAULT_NO_GU_CLOSURE", "group__model__details.html#ga5308de46faaca4b9fd16045864901ee7", null ],
    [ "VRNA_MODEL_DEFAULT_CIRC", "group__model__details.html#ga22059033db7bcd875c51fec32425490a", null ],
    [ "VRNA_MODEL_DEFAULT_GQUAD", "group__model__details.html#ga793ed812e86f43799b14b2deee917f23", null ],
    [ "VRNA_MODEL_DEFAULT_UNIQ_ML", "group__model__details.html#ga63f6006a02ba2d89148441f406c309e7", null ],
    [ "VRNA_MODEL_DEFAULT_ENERGY_SET", "group__model__details.html#ga6fcf6b2d0f89256cdbd166486c9b6e1e", null ],
    [ "VRNA_MODEL_DEFAULT_BACKTRACK", "group__model__details.html#ga3fda8006ab84baf817bd8e5ccbc6bb35", null ],
    [ "VRNA_MODEL_DEFAULT_BACKTRACK_TYPE", "group__model__details.html#gad0e81fcaca53c4a826c68e0796de2afb", null ],
    [ "VRNA_MODEL_DEFAULT_COMPUTE_BPP", "group__model__details.html#ga1d6cd5051940b126c248147c011bac6c", null ],
    [ "VRNA_MODEL_DEFAULT_MAX_BP_SPAN", "group__model__details.html#ga7cb6f4ae8fdebff6746a4410814f2977", null ],
    [ "VRNA_MODEL_DEFAULT_WINDOW_SIZE", "group__model__details.html#ga8de04a9cb57e811e313b0f9f207f6bdb", null ],
    [ "VRNA_MODEL_DEFAULT_LOG_ML", "group__model__details.html#ga938f68463e84fe060aa6502f428a517d", null ],
    [ "VRNA_MODEL_DEFAULT_ALI_OLD_EN", "group__model__details.html#ga2a5bbfc1edf33077e39466d2d9807115", null ],
    [ "VRNA_MODEL_DEFAULT_ALI_RIBO", "group__model__details.html#ga64b3ab65a9ca42d4ad1d05e193083147", null ],
    [ "VRNA_MODEL_DEFAULT_ALI_CV_FACT", "group__model__details.html#gaaaf3d73d6abc18d3889676952bfedb96", null ],
    [ "VRNA_MODEL_DEFAULT_ALI_NC_FACT", "group__model__details.html#ga8f774daaafec28160c1ca5d09f2cbdba", null ],
    [ "MAXALPHA", "group__model__details.html#ga05a5ffe718aa431d97419a12fb082379", null ],
    [ "vrna_md_t", "group__model__details.html#ga1f8a10e12a0a1915f2a4eff0b28ea17c", null ],
    [ "vrna_md_set_default", "group__model__details.html#ga8ac6ff84936282436f822644bf841f66", null ],
    [ "vrna_md_update", "group__model__details.html#ga36ae40b8c3b82362f5798ad5b047b814", null ],
    [ "vrna_md_option_string", "group__model__details.html#ga3a7469f0725a849af6ba61a57dfd60ce", null ],
    [ "vrna_md_defaults_reset", "group__model__details.html#ga70834424cf804d149937de89f80ceb45", null ],
    [ "vrna_md_defaults_temperature", "group__model__details.html#gaf9e527e9a2f7e6fd6e42bc6e602f5445", null ],
    [ "vrna_md_defaults_temperature_get", "group__model__details.html#ga96b24a74437f9ba46c4e06343155bf46", null ],
    [ "vrna_md_defaults_betaScale", "group__model__details.html#gae984567db36c3f9b8731ecc917abf3a2", null ],
    [ "vrna_md_defaults_betaScale_get", "group__model__details.html#gabb8780f5410c52f970d75b044059bd09", null ],
    [ "vrna_md_defaults_dangles", "group__model__details.html#gac76a5374def8e5e4e644ff6e4cc72dee", null ],
    [ "vrna_md_defaults_dangles_get", "group__model__details.html#ga67ca06f95ae133778c79a4493c9817b8", null ],
    [ "vrna_md_defaults_special_hp", "group__model__details.html#gafff6449a02744add0308e653230c15fc", null ],
    [ "vrna_md_defaults_special_hp_get", "group__model__details.html#ga1d68a6efdaa1253cc63fd9cd06452559", null ],
    [ "vrna_md_defaults_noLP", "group__model__details.html#ga2f88ffc393ac9d7987849c965fd29ea8", null ],
    [ "vrna_md_defaults_noLP_get", "group__model__details.html#ga934344888fbacaed538bbbfe910f2aa6", null ],
    [ "vrna_md_defaults_noGU", "group__model__details.html#ga98218f85c7a957a1d1ddf4627fdf5a39", null ],
    [ "vrna_md_defaults_noGU_get", "group__model__details.html#ga5faa7d4e536d7fe36ec25428c0cf2563", null ],
    [ "vrna_md_defaults_noGUclosure", "group__model__details.html#gade5b9951d71ca2fb357a4e6c0c18ccd1", null ],
    [ "vrna_md_defaults_noGUclosure_get", "group__model__details.html#ga4f7fdad083243a5348d63320ddaa70f3", null ],
    [ "vrna_md_defaults_logML", "group__model__details.html#ga3de50a73455d88c3957386933b8e1f90", null ],
    [ "vrna_md_defaults_logML_get", "group__model__details.html#ga93f04e070d529c5d0bb87c9681f6ad29", null ],
    [ "vrna_md_defaults_circ", "group__model__details.html#ga4e1deb3e91a8a99e5c6dd905a5eb0186", null ],
    [ "vrna_md_defaults_circ_get", "group__model__details.html#gad3a7e58de344ad93a08925f58f94f6fb", null ],
    [ "vrna_md_defaults_gquad", "group__model__details.html#ga0685ca2aeb39af76f2421fc308163dce", null ],
    [ "vrna_md_defaults_gquad_get", "group__model__details.html#gae645b8612f879eb38b45244fa9eddb9e", null ],
    [ "vrna_md_defaults_uniq_ML", "group__model__details.html#ga59b944f61c5d2babec2d4c48c820de67", null ],
    [ "vrna_md_defaults_uniq_ML_get", "group__model__details.html#gab48e70fd024bf838404bcbcca0c874a0", null ],
    [ "vrna_md_defaults_energy_set", "group__model__details.html#ga8dd29c55787a4576277e1907e92d810c", null ],
    [ "vrna_md_defaults_energy_set_get", "group__model__details.html#ga017ed6afb1cba2b7f242412cab618b53", null ],
    [ "vrna_md_defaults_backtrack", "group__model__details.html#ga978c468b2fe96a70d5191e3dd17d5599", null ],
    [ "vrna_md_defaults_backtrack_get", "group__model__details.html#ga90da1156e6883ddd68527c2830706648", null ],
    [ "vrna_md_defaults_backtrack_type", "group__model__details.html#ga68305274de96b56b7799575e222560d8", null ],
    [ "vrna_md_defaults_backtrack_type_get", "group__model__details.html#ga1425b4ebd0e034dead66d79becd64143", null ],
    [ "vrna_md_defaults_compute_bpp", "group__model__details.html#gaf1b5db10f1f476767f9a95f8a78e3132", null ],
    [ "vrna_md_defaults_compute_bpp_get", "group__model__details.html#gaa3a537e61fbe0518673bf9f73fd820f3", null ],
    [ "vrna_md_defaults_max_bp_span", "group__model__details.html#ga4c4bc962f09b4480cb8499f1cf8ae4ec", null ],
    [ "vrna_md_defaults_max_bp_span_get", "group__model__details.html#gaa60f989e062fecd4d4bac89c1883da85", null ],
    [ "vrna_md_defaults_min_loop_size", "group__model__details.html#gac152f1e78c1058a10261022c8dfda0f7", null ],
    [ "vrna_md_defaults_min_loop_size_get", "group__model__details.html#ga5cc691174a75c652807dc361b617632a", null ],
    [ "vrna_md_defaults_window_size", "group__model__details.html#ga7b802ce0e8c3181bf5cb580de6d5b26a", null ],
    [ "vrna_md_defaults_window_size_get", "group__model__details.html#ga670146a9aa3ba77f4d422d60b7c30ac9", null ],
    [ "vrna_md_defaults_oldAliEn", "group__model__details.html#ga41521d5b9fb7e0f31e7ea73f5792afab", null ],
    [ "vrna_md_defaults_oldAliEn_get", "group__model__details.html#ga2374492b5019df88022fe4c05f0f3630", null ],
    [ "vrna_md_defaults_ribo", "group__model__details.html#ga937c45e1d06fd6168730a9b08d130be3", null ],
    [ "vrna_md_defaults_ribo_get", "group__model__details.html#ga169027f0c0561ea7d87b655e4b336bfc", null ],
    [ "vrna_md_defaults_cv_fact", "group__model__details.html#gad3a3f40baafd91a6ce80a91a68e20053", null ],
    [ "vrna_md_defaults_cv_fact_get", "group__model__details.html#gae59c68393807217b0a2497adb64d3ee3", null ],
    [ "vrna_md_defaults_nc_fact", "group__model__details.html#gac35e596c850dce3ad55c49119fd7d471", null ],
    [ "vrna_md_defaults_nc_fact_get", "group__model__details.html#ga7ac759eaa7159bf5f022745f5da59508", null ],
    [ "vrna_md_defaults_sfact", "group__model__details.html#ga3f73d3029d3d0025d4cc311510cd95a3", null ],
    [ "vrna_md_defaults_sfact_get", "group__model__details.html#gab2df6aab954b63fd3592d18e90285dae", null ],
    [ "set_model_details", "group__model__details.html#gabad896c3650d420f3f3ddefc69e2bceb", null ],
    [ "temperature", "group__model__details.html#gab4b11c8d9c758430960896bc3fe82ead", null ],
    [ "pf_scale", "group__model__details.html#gad3b22044065acc6dee0af68931b52cfd", null ],
    [ "dangles", "group__model__details.html#ga72b511ed1201f7e23ec437e468790d74", null ],
    [ "tetra_loop", "group__model__details.html#ga4f6265bdf0ead7ff4628a360adbfd77e", null ],
    [ "noLonelyPairs", "group__model__details.html#ga097eccaabd6ae8b4fef83cccff85bb5d", null ],
    [ "noGU", "group__model__details.html#gabf380d09e4f1ab94fc6af57cf0ad5d32", null ],
    [ "no_closingGU", "group__model__details.html#gaa8d1c7b92489179e1eafa562b7bdd259", null ],
    [ "circ", "group__model__details.html#gaf9202a1a09f5828dc731e2d9a10fa111", null ],
    [ "gquad", "group__model__details.html#ga25f2bdcdf56e813d288845484a13d704", null ],
    [ "canonicalBPonly", "group__model__details.html#ga22ae821b8918930e20ffa3fa84802b4b", null ],
    [ "uniq_ML", "group__model__details.html#ga6c5655c8b272e3e6cab74dd0f540294f", null ],
    [ "energy_set", "group__model__details.html#gafb1ef1166da85092ae8a325e02dcae71", null ],
    [ "do_backtrack", "group__model__details.html#gad512b5dd4dbec60faccfe137bb474489", null ],
    [ "backtrack_type", "group__model__details.html#ga83bdb43472a259c71e69fa9f70f420c3", null ],
    [ "nonstandards", "group__model__details.html#ga2695d91cc535d09c2eae5c3884e2ec64", null ],
    [ "max_bp_span", "group__model__details.html#ga18df869af0d70101106458fc3f027806", null ],
    [ "oldAliEn", "group__model__details.html#gac408868ba00671cbc7d1d535105af045", null ],
    [ "ribo", "group__model__details.html#ga0656afca1d2853f9ee6591172f5638de", null ],
    [ "logML", "group__model__details.html#ga80c3c5fd35e7479704cc91d2d0367743", null ]
];