RNA Secondary Structure Prediction

This module contains all functions related to thermodynamic folding of RNAs. More...

Collaboration diagram for RNA Secondary Structure Prediction:

## Modules

| Computing Minimum Free Energy (MFE) Structures
| This section covers all functions and variables related to the calculation of minimum free energy (MFE) structures.
| Computing Partition Functions and Pair Probabilities
| This section provides information about all functions and variables related to the calculation of the partition function and base pair probabilities.
| Enumerating Suboptimal Structures
| Calculate Secondary Structures of two RNAs upon Dimerization
| Predict structures formed by two molecules upon hybridization.
| Predicting Consensus Structures from Alignment(s)
| compute various properties (consensus MFE structures, partition function, Boltzmann distributed stochastic samples, ...) for RNA sequence alignments
| Predicting Locally stable structures of large sequences
| Classified Dynamic Programming

## Files

file | mm.h
| Several Maximum Matching implementations.

## Detailed Description

This module contains all functions related to thermodynamic folding of RNAs.