fold_vars.h
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#ifndef VIENNA_RNA_PACKAGE_FOLD_VARS_H
#define VIENNA_RNA_PACKAGE_FOLD_VARS_H
#include <ViennaRNA/data_structures.h>
/* For now, we include model.h by default to provide backwards compatibility
However, this will most likely change, since fold_vars.h is scheduled to
vanish from the sources at latest in ViennaRNA Package v3
*/
#include <ViennaRNA/model.h>
#ifdef DEPRECATION_WARNINGS
# ifdef __GNUC__
# define DEPRECATED(func) func __attribute__ ((deprecated))
# else
# define DEPRECATED(func) func
# endif
#else
# define DEPRECATED(func) func
#endif
extern int fold_constrained;
extern int csv;
extern char *RibosumFile;
extern int james_rule;
extern int logML;
extern int cut_point;
extern bondT *base_pair;
extern FLT_OR_DBL *pr;
extern int *iindx;
#endif
FLT_OR_DBL
double FLT_OR_DBL
Typename for floating point number in partition function computations.
Definition: data_structures.h:39
csv
int csv
generate comma seperated output
cut_point
int cut_point
Marks the position (starting from 1) of the first nucleotide of the second molecule within the concat...
model.h
The model details data structure and its corresponding modifiers.
data_structures.h
base_pair
bondT * base_pair
Contains a list of base pairs after a call to fold().
fold_constrained
int fold_constrained
Global switch to activate/deactivate folding with structure constraints.
james_rule
int james_rule
RibosumFile
char * RibosumFile
vrna_bp_stack_s
Base pair stack element.
Definition: data_structures.h:192
pr
FLT_OR_DBL * pr
A pointer to the base pair probability matrix.
iindx
int * iindx
index array to move through pr.
logML
int logML