svm_utils.h
#ifndef VIENNA_RNA_PACKAGE_SUBOPT_H
#define VIENNA_RNA_PACKAGE_SUBOPT_H
#include "svm.h"
extern char *avg_model_string;
extern char *sd_model_string;
float get_z(char *sequence,
double energy);
double avg_regression (int N,
int A,
int C,
int G,
int T,
struct svm_model *avg_model,
int *info );
double sd_regression (int N,
int A,
int C,
int G,
int T,
struct svm_model *sd_model);
double minimal_sd (int N,
int A,
int C,
int G,
int T);
struct svm_model *svm_load_model_string(char *modelString);
int *get_seq_composition( short *S,
unsigned int start,
unsigned int stop,
unsigned int length);
#endif