<map id="ViennaRNA/params.h" name="ViennaRNA/params.h">
<area shape="rect" id="node2" href="$2Dfold_8h.html" title="ViennaRNA/2Dfold.h" alt="" coords="269,162,413,189"/>
<area shape="rect" id="node3" href="$alifold_8h.html" title="compute various properties (consensus MFE structures, partition function, Boltzmann distributed stoch..." alt="" coords="431,326,571,353"/>
<area shape="rect" id="node4" href="$cofold_8h.html" title="MFE version of cofolding routines. " alt="" coords="4824,244,4965,271"/>
<area shape="rect" id="node5" href="$data__structures_8h.html" title="ViennaRNA/data_structures.h" alt="" coords="3175,80,3371,107"/>
<area shape="rect" id="node9" href="$part__func_8h.html" title="Partition function of single RNA sequences. " alt="" coords="539,244,699,271"/>
<area shape="rect" id="node12" href="$interior__loops_8h.html" title="Energy evaluation of interior loops for MFE and partition function calculations. " alt="" coords="1795,319,1930,360"/>
<area shape="rect" id="node19" href="$eval_8h.html" title="Functions and variables related to energy evaluation of sequence/structure pairs. ..." alt="" coords="995,162,1125,189"/>
<area shape="rect" id="node20" href="$fold_8h.html" title="MFE calculations for single RNA sequences. " alt="" coords="1023,244,1150,271"/>
<area shape="rect" id="node21" href="$exterior__loops_8h.html" title="Energy evaluation of exterior loops for MFE and partition function calculations. " alt="" coords="5,155,144,196"/>
<area shape="rect" id="node26" href="$gquad_8h.html" title="Various functions related to G&#45;quadruplex computations. " alt="" coords="5403,162,5544,189"/>
<area shape="rect" id="node27" href="$hairpin__loops_8h.html" title="Energy evaluation of hairpin loops for MFE and partition function calculations. " alt="" coords="4619,326,4802,353"/>
<area shape="rect" id="node29" href="$LPfold_8h.html" title="Function declarations of partition function variants of the Lfold algorithm. " alt="" coords="5569,162,5711,189"/>
<area shape="rect" id="node30" href="$MEA_8h.html" title="Computes a MEA (maximum expected accuracy) structure. " alt="" coords="5735,162,5870,189"/>
<area shape="rect" id="node33" href="$multibranch__loops_8h.html" title="Energy evaluation of multibranch loops for MFE and partition function calculations. " alt="" coords="5283,319,5445,360"/>
<area shape="rect" id="node34" href="$part__func__co_8h.html" title="Partition function for two RNA sequences. " alt="" coords="5895,162,6076,189"/>
<area shape="rect" id="node48" href="$subopt_8h.html" title="RNAsubopt and density of states declarations. " alt="" coords="6101,162,6246,189"/>
<area shape="rect" id="node6" href="$2Dpfold_8h.html" title="ViennaRNA/2Dpfold.h" alt="" coords="4479,162,4630,189"/>
<area shape="rect" id="node7" href="$ali__plex_8h_source.html" title="ViennaRNA/ali_plex.h" alt="" coords="4654,162,4805,189"/>
<area shape="rect" id="node8" href="$boltzmann__sampling_8h.html" title="Boltzmann Sampling of secondary structures from the ensemble. " alt="" coords="488,155,643,196"/>
<area shape="rect" id="node10" href="$centroid_8h.html" title="Centroid structure computation. " alt="" coords="819,162,971,189"/>
<area shape="rect" id="node11" href="$constraints_8h.html" title="Functions and data structures for constraining secondary structure predictions and evaluation..." alt="" coords="1777,244,1948,271"/>
<area shape="rect" id="node14" href="$constraints__hard_8h.html" title="Functions and data structures for handling of secondary structure hard constraints. " alt="" coords="3323,155,3482,196"/>
<area shape="rect" id="node15" href="$constraints__SHAPE_8h.html" title="This module provides function to incorporate SHAPE reactivity data into the folding recursions by mea..." alt="" coords="1251,155,1410,196"/>
<area shape="rect" id="node16" href="$constraints__soft_8h.html" title="Functions and data structures for secondary structure soft constraints. " alt="" coords="1434,155,1593,196"/>
<area shape="rect" id="node17" href="$dp__matrices_8h.html" title="ViennaRNA/dp_matrices.h" alt="" coords="1969,162,2146,189"/>
<area shape="rect" id="node18" href="$duplex_8h.html" title="Duplex folding function declarations... " alt="" coords="2171,162,2315,189"/>
<area shape="rect" id="node22" href="$file__formats_8h.html" title="Functions dealing with file formats for RNA sequences, structures, and alignments. " alt="" coords="2339,162,2514,189"/>
<area shape="rect" id="node23" href="$findpath_8h.html" title="ViennaRNA/findpath.h" alt="" coords="2539,162,2691,189"/>
<area shape="rect" id="node24" href="$fold__vars_8h.html" title="Here all all declarations of the global variables used throughout RNAlib. " alt="" coords="4155,244,4314,271"/>
<area shape="rect" id="node28" href="$ligand_8h.html" title="Functions for incorporation of ligands binding to haipirn and interior loop motifs. " alt="" coords="1617,162,1757,189"/>
<area shape="rect" id="node31" href="$mfe_8h.html" title="MFE calculations for single RNA sequences. " alt="" coords="4032,162,4160,189"/>
<area shape="rect" id="node35" href="$part__func__up_8h.html" title="Partition Function Cofolding as stepwise process. " alt="" coords="2715,162,2896,189"/>
<area shape="rect" id="node36" href="$perturbation__fold_8h.html" title="Find a vector of perturbation energies that minimizes the discripancies between predicted and observe..." alt="" coords="1781,155,1944,196"/>
<area shape="rect" id="node37" href="$PKplex_8h_source.html" title="ViennaRNA/PKplex.h" alt="" coords="2921,162,3069,189"/>
<area shape="rect" id="node38" href="$plex_8h_source.html" title="ViennaRNA/plex.h" alt="" coords="3093,162,3224,189"/>
<area shape="rect" id="node39" href="$plot__layouts_8h.html" title="Secondary structure plot layout algorithms. " alt="" coords="5101,162,5277,189"/>
<area shape="rect" id="node41" href="$PS__dot_8h.html" title="Various functions for plotting RNA secondary structures, dot&#45;plots and other visualizations. " alt="" coords="5109,326,5259,353"/>
<area shape="rect" id="node42" href="$profiledist_8h.html" title="ViennaRNA/profiledist.h" alt="" coords="3507,162,3669,189"/>
<area shape="rect" id="node43" href="$snofold_8h_source.html" title="ViennaRNA/snofold.h" alt="" coords="3694,162,3842,189"/>
<area shape="rect" id="node44" href="$snoop_8h_source.html" title="ViennaRNA/snoop.h" alt="" coords="3867,162,4008,189"/>
<area shape="rect" id="node45" href="$string__utils_8h.html" title="General utility&#45; and helper&#45;functions for RNA sequence and structure strings used throughout the Vien..." alt="" coords="4286,162,4455,189"/>
<area shape="rect" id="node46" href="$utils_8h.html" title="General utility&#45; and helper&#45;functions used throughout the ViennaRNA Package. " alt="" coords="4339,244,4469,271"/>
<area shape="rect" id="node47" href="$structure__utils_8h.html" title="Various utility&#45; and helper&#45;functions for secondary structure parsing, converting, etc. " alt="" coords="4829,155,4976,196"/>
<area shape="rect" id="node13" href="$loop__energies_8h.html" title="Energy evaluation for MFE and partition function calculations. " alt="" coords="3193,408,3380,435"/>
<area shape="rect" id="node25" href="$pair__mat_8h_source.html" title="ViennaRNA/pair_mat.h" alt="" coords="4241,326,4397,353"/>
<area shape="rect" id="node32" href="$Lfold_8h.html" title="Predicting local MFE structures of large sequences. " alt="" coords="3997,244,4131,271"/>
<area shape="rect" id="node40" href="$plot__structure_8h.html" title="Various functions for plotting RNA secondary structures. " alt="" coords="5091,244,5277,271"/>
</map>
