Predicting Locally stable structures of large sequences
RNA Secondary Structure Prediction
Collaboration diagram for Predicting Locally stable structures of large sequences:

## Modules

| Local MFE structure Prediction and Z-scores
| Partition functions for locally stable secondary structures
| Local MFE consensus structures for Sequence Alignments

## Files

file | Lfold.h
| Predicting local MFE structures of large sequences.

## Detailed Description

Local structures can be predicted by a modified version of the fold() algorithm that restricts the span of all base pairs.