bin/abba-baba
bin/bFst
bin/bed2region
bin/bgziptabix
bin/dumpContigsFromHeader
bin/genotypeSummary
bin/hapLrt
bin/iHS
bin/meltEHH
bin/normalize-iHS
bin/pFst
bin/pVst
bin/permuteGPAT++
bin/permuteSmooth
bin/plotHaps
bin/popStats
bin/segmentFst
bin/segmentIhs
bin/sequenceDiversity
bin/smoother
bin/vcf2bed.py
bin/vcf2dag
bin/vcf2fasta
bin/vcf2sqlite.py
bin/vcf2tsv
bin/vcf_strip_extra_headers
bin/vcfaddinfo
bin/vcfafpath
bin/vcfaltcount
bin/vcfannotate
bin/vcfannotategenotypes
bin/vcfbiallelic
bin/vcfbreakmulti
bin/vcfcat
bin/vcfcheck
bin/vcfclassify
bin/vcfclearid
bin/vcfclearinfo
bin/vcfcombine
bin/vcfcommonsamples
bin/vcfcomplex
bin/vcfcountalleles
bin/vcfcreatemulti
bin/vcfdistance
bin/vcfecho
bin/vcfentropy
bin/vcfevenregions
bin/vcffilter
bin/vcffirstheader
bin/vcffixup
bin/vcfflatten
bin/vcfgeno2alleles
bin/vcfgeno2haplo
bin/vcfgenosamplenames
bin/vcfgenosummarize
bin/vcfgenotypecompare
bin/vcfgenotypes
bin/vcfglbound
bin/vcfglxgt
bin/vcfgtcompare.sh
bin/vcfhetcount
bin/vcfhethomratio
bin/vcfindelproximity
bin/vcfindels
bin/vcfindex
bin/vcfinfo2qual
bin/vcfinfosummarize
bin/vcfintersect
bin/vcfjoincalls
bin/vcfkeepgeno
bin/vcfkeepinfo
bin/vcfkeepsamples
bin/vcfld
bin/vcfleftalign
bin/vcflength
bin/vcfmultiallelic
bin/vcfmultiway
bin/vcfmultiwayscripts
bin/vcfnobiallelicsnps
bin/vcfnoindels
bin/vcfnosnps
bin/vcfnulldotslashdot
bin/vcfnullgenofields
bin/vcfnumalt
bin/vcfoverlay
bin/vcfplotaltdiscrepancy.r
bin/vcfplotaltdiscrepancy.sh
bin/vcfplotsitediscrepancy.r
bin/vcfplottstv.sh
bin/vcfprimers
bin/vcfprintaltdiscrepancy.r
bin/vcfprintaltdiscrepancy.sh
bin/vcfqual2info
bin/vcfqualfilter
bin/vcfrandom
bin/vcfrandomsample
bin/vcfregionreduce
bin/vcfregionreduce_and_cut
bin/vcfregionreduce_pipe
bin/vcfregionreduce_uncompressed
bin/vcfremap
bin/vcfremoveaberrantgenotypes
bin/vcfremovenonATGC
bin/vcfremovesamples
bin/vcfsample2info
bin/vcfsamplediff
bin/vcfsamplenames
bin/vcfsitesummarize
bin/vcfsnps
bin/vcfsort
bin/vcfstreamsort
bin/vcfuniq
bin/vcfuniqalleles
bin/vcfvarstats
bin/wcFst
include/vcflib/BandedSmithWaterman.h
include/vcflib/BedReader.h
include/vcflib/Fasta.h
include/vcflib/IndelAllele.h
include/vcflib/IntervalTree.h
include/vcflib/LargeFileSupport.h
include/vcflib/LeftAlign.h
include/vcflib/LeftAlign.hpp
include/vcflib/Mosaik.h
include/vcflib/Region.h
include/vcflib/Repeats.h
include/vcflib/SmithWatermanGotoh.h
include/vcflib/Variant.h
include/vcflib/allele.hpp
include/vcflib/canonicalize.h
include/vcflib/catch.hpp
include/vcflib/cdflib.hpp
include/vcflib/cigar.hpp
include/vcflib/convert.h
include/vcflib/disorder.h
include/vcflib/filevercmp.h
include/vcflib/gpatInfo.hpp
include/vcflib/join.h
include/vcflib/legacy.h
include/vcflib/makeUnique.h
include/vcflib/mt19937ar.h
include/vcflib/multichoose.h
include/vcflib/murmur3.hpp
include/vcflib/pdflib.hpp
include/vcflib/rkmh.hpp
include/vcflib/rnglib.hpp
include/vcflib/split.h
include/vcflib/ssw.hpp
include/vcflib/ssw_cpp.hpp
include/vcflib/var.hpp
include/vcflib/vcf-c-api.h
include/vcflib/vcf-wfa.h
lib/libvcflib.1.dylib
lib/libvcflib.dylib
lib/pkgconfig/vcflib.pc
lib/pyvcflib.cpython-313-darwin.so
man/man1/abba-baba.1
man/man1/bFst.1
man/man1/dumpContigsFromHeader.1
man/man1/genotypeSummary.1
man/man1/hapLrt.1
man/man1/iHS.1
man/man1/meltEHH.1
man/man1/normalize-iHS.1
man/man1/pFst.1
man/man1/pVst.1
man/man1/permuteGPAT++.1
man/man1/permuteSmooth.1
man/man1/plotHaps.1
man/man1/popStats.1
man/man1/pyvcflib.1
man/man1/segmentFst.1
man/man1/segmentIhs.1
man/man1/sequenceDiversity.1
man/man1/smoother.1
man/man1/vcf2dag.1
man/man1/vcf2fasta.1
man/man1/vcf2tsv.1
man/man1/vcfaddinfo.1
man/man1/vcfafpath.1
man/man1/vcfallelicprimitives.1
man/man1/vcfaltcount.1
man/man1/vcfannotate.1
man/man1/vcfannotategenotypes.1
man/man1/vcfbreakmulti.1
man/man1/vcfcat.1
man/man1/vcfcheck.1
man/man1/vcfclassify.1
man/man1/vcfcleancomplex.1
man/man1/vcfcombine.1
man/man1/vcfcommonsamples.1
man/man1/vcfcountalleles.1
man/man1/vcfcreatemulti.1
man/man1/vcfdistance.1
man/man1/vcfecho.1
man/man1/vcfentropy.1
man/man1/vcfevenregions.1
man/man1/vcffilter.1
man/man1/vcffixup.1
man/man1/vcfflatten.1
man/man1/vcfgeno2alleles.1
man/man1/vcfgeno2haplo.1
man/man1/vcfgenosamplenames.1
man/man1/vcfgenosummarize.1
man/man1/vcfgenotypecompare.1
man/man1/vcfgenotypes.1
man/man1/vcfglbound.1
man/man1/vcfglxgt.1
man/man1/vcfhetcount.1
man/man1/vcfhethomratio.1
man/man1/vcfindex.1
man/man1/vcfinfo2qual.1
man/man1/vcfinfosummarize.1
man/man1/vcfintersect.1
man/man1/vcfkeepgeno.1
man/man1/vcfkeepinfo.1
man/man1/vcfkeepsamples.1
man/man1/vcfld.1
man/man1/vcfleftalign.1
man/man1/vcflength.1
man/man1/vcflib-api.1
man/man1/vcflib.1
man/man1/vcfnulldotslashdot.1
man/man1/vcfnullgenofields.1
man/man1/vcfnumalt.1
man/man1/vcfoverlay.1
man/man1/vcfparsealts.1
man/man1/vcfprimers.1
man/man1/vcfqual2info.1
man/man1/vcfrandom.1
man/man1/vcfrandomsample.1
man/man1/vcfremap.1
man/man1/vcfremoveaberrantgenotypes.1
man/man1/vcfremovesamples.1
man/man1/vcfroc.1
man/man1/vcfsample2info.1
man/man1/vcfsamplediff.1
man/man1/vcfsamplenames.1
man/man1/vcfsitesummarize.1
man/man1/vcfstats.1
man/man1/vcfstreamsort.1
man/man1/vcfuniq.1
man/man1/vcfuniqalleles.1
man/man1/vcfwave.1
man/man1/wcFst.1
