Build started at 2022-04-13T17:01:24.075274
Main binary: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/python3.10
Build Options: -Dprefix=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/install -Dbuildtype=release
Python system: Darwin
The Meson build system
Version: 0.62.0
Source dir: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib
Build dir: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile
Build type: native build
Project name: btllib
Project version: 1.4.1
Sanity testing C++ compiler: x86_64-apple-darwin13.4.0-clang++
Is cross compiler: False.
Sanity check compiler command line: x86_64-apple-darwin13.4.0-clang++ sanitycheckcpp.cc -o sanitycheckcpp.exe -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work=/usr/local/src/conda/tigmint-1.2.6 -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -mmacosx-version-min=10.9 -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib -L/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib
Sanity check compile stdout:

-----
Sanity check compile stderr:

-----
Running test binary command: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/sanitycheckcpp.exe
C++ compiler for the host machine: x86_64-apple-darwin13.4.0-clang++ (clang 12.0.1 "clang version 12.0.1")
C++ linker for the host machine: x86_64-apple-darwin13.4.0-clang++ ld64 609
Sanity testing C++ compiler: x86_64-apple-darwin13.4.0-clang++
Is cross compiler: False.
Sanity check compiler command line: x86_64-apple-darwin13.4.0-clang++ sanitycheckcpp.cc -o sanitycheckcpp.exe -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work=/usr/local/src/conda/tigmint-1.2.6 -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -mmacosx-version-min=10.9 -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib -L/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib
Sanity check compile stdout:

-----
Sanity check compile stderr:

-----
Running test binary command: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/sanitycheckcpp.exe
C++ compiler for the build machine: x86_64-apple-darwin13.4.0-clang++ (clang 12.0.1 "clang version 12.0.1")
C++ linker for the build machine: x86_64-apple-darwin13.4.0-clang++ ld64 609
Build machine cpu family: x86_64
Build machine cpu: x86_64
Host machine cpu family: x86_64
Host machine cpu: x86_64
Target machine cpu family: x86_64
Target machine cpu: x86_64
Configuring config.hpp using configuration
Run-time dependency threads found: YES
Running compile:
Working directory:  /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/tmpi_r4_pi8
Command line:  x86_64-apple-darwin13.4.0-clang++ /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/tmpi_r4_pi8/testfile.cpp -E -P -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work=/usr/local/src/conda/tigmint-1.2.6 -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -mmacosx-version-min=10.9 -P -O0 -fpermissive -Werror=implicit-function-declaration -fopenmp 

Code:
 
        
        #ifndef _OPENMP
        # define _OPENMP
        #endif
        "MESON_GET_DEFINE_DELIMITER"
_OPENMP
Compiler stdout:
 




        "MESON_GET_DEFINE_DELIMITER"
201811

Compiler stderr:
 
Running compile:
Working directory:  /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/tmpwk9mgwrq
Command line:  x86_64-apple-darwin13.4.0-clang++ /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/tmpwk9mgwrq/testfile.cpp -E -P -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work=/usr/local/src/conda/tigmint-1.2.6 -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -mmacosx-version-min=10.9 -P -O0 -fpermissive -Werror=implicit-function-declaration 

Code:
 
        #ifdef __has_include
         #if !__has_include("omp.h")
          #error "Header 'omp.h' could not be found"
         #endif
        #else
         #include <omp.h>
        #endif
Compiler stdout:
 

Compiler stderr:
 
Run-time dependency OpenMP found: YES 5.0

Executing subproject cpptoml method cmake 

DEPRECATION: CMake support for versions <3.17 is deprecated since Meson 0.62.0.
|
|   However, Meson was only able to find CMake .
|
|   Support for all CMake versions below 3.17.0 will be removed once
|   newer CMake versions are more widely adopted. If you encounter
|   any errors please try upgrading CMake to a newer version first.

CMake binary for 0 is not cached
CMake binary missing from cross or native file, or env var undefined.
Trying a default CMake fallback at cmake
Found CMake: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/cmake (3.23.1)

Configuring the build directory with CMake version 3.23.1
Running CMake with: -G Ninja -DCMAKE_INSTALL_PREFIX=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/install
  - build directory:          /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/cpptoml/__CMake_build
  - source directory:         /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml
  - toolchain file:           /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/cpptoml/__CMake_build/CMakeMesonToolchainFile.cmake
  - preload file:             /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/lib/python3.10/site-packages/mesonbuild/cmake/data/preload.cmake
  - trace args:               --trace-expand --trace-format=json-v1 --no-warn-unused-cli --trace-redirect=cmake_trace.txt
  - disabled policy warnings: [CMP0025, CMP0047, CMP0056, CMP0060, CMP0065, CMP0066, CMP0067, CMP0082, CMP0089, CMP0102]

Calling CMake (['/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/cmake']) in /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/cpptoml/__CMake_build with:
  - "-G"
  - "Ninja"
  - "-DCMAKE_INSTALL_PREFIX=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/install"
  - "--trace-expand"
  - "--trace-format=json-v1"
  - "--no-warn-unused-cli"
  - "--trace-redirect=cmake_trace.txt"
  - "-DCMAKE_POLICY_WARNING_CMP0025=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0047=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0056=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0060=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0065=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0066=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0067=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0082=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0089=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0102=OFF"
  - "-DCMAKE_TOOLCHAIN_FILE=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/cpptoml/__CMake_build/CMakeMesonToolchainFile.cmake"
  - "-DMESON_PRELOAD_FILE=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/lib/python3.10/site-packages/mesonbuild/cmake/data/preload.cmake"
  - "/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml"
  - "-DCMAKE_PREFIX_PATH=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p"
Running with expanded trace output on.
Not searching for unused variables given on the command line.
Trace will be written to cmake_trace.txt
-- The C compiler identification is Clang 12.0.1
-- The CXX compiler identification is Clang 12.0.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/x86_64-apple-darwin13.4.0-clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/x86_64-apple-darwin13.4.0-clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Locating libc++...
-- Located libc++: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/libc++.dylib
-- Located libc++ include path: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include/c++/v1/
--     Locating libc++'s abi...
--     Found libc++abi: /Applications/Xcode_13.2.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk/usr/lib/libc++abi.tbd
-- Found LIBCXX: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/libc++.dylib  
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
-- Configuring done
-- Generating done
-- Build files have been written to: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/cpptoml/__CMake_build

CMake configuration: SUCCEEDED
CMake trace warning: add_executable() non imported executables are not supported
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:1 add_executable(['parse', 'parse.cpp'])
CMake trace warning: target_link_options() TARGET parse not found
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:2 target_link_libraries(['parse', 'cpptoml'])
CMake trace warning: set_target_properties() TARGET parse not found
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:3 set_target_properties(['parse', 'PROPERTIES', 'CXX_STANDARD', '11', 'CXX_EXTENSIONS', 'OFF', 'CXX_STANDARD_REQUIRED', 'YES'])
CMake trace warning: add_executable() non imported executables are not supported
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:8 add_executable(['cpptoml-parser', 'parse_stdin.cpp'])
CMake trace warning: target_link_options() TARGET cpptoml-parser not found
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:9 target_link_libraries(['cpptoml-parser', 'cpptoml'])
CMake trace warning: set_target_properties() TARGET cpptoml-parser not found
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:10 set_target_properties(['cpptoml-parser', 'PROPERTIES', 'CXX_STANDARD', '11', 'CXX_EXTENSIONS', 'OFF', 'CXX_STANDARD_REQUIRED', 'YES'])
CMake trace warning: add_executable() non imported executables are not supported
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:15 add_executable(['cpptoml-build', 'build_toml.cpp'])
CMake trace warning: target_link_options() TARGET cpptoml-build not found
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:16 target_link_libraries(['cpptoml-build', 'cpptoml'])
CMake trace warning: set_target_properties() TARGET cpptoml-build not found
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:17 set_target_properties(['cpptoml-build', 'PROPERTIES', 'CXX_STANDARD', '11', 'CXX_EXTENSIONS', 'OFF', 'CXX_STANDARD_REQUIRED', 'YES'])
CMake trace warning: add_executable() non imported executables are not supported
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:22 add_executable(['cpptoml-conversions', 'conversions.cpp'])
CMake trace warning: target_link_options() TARGET cpptoml-conversions not found
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:23 target_link_libraries(['cpptoml-conversions', 'cpptoml'])
CMake trace warning: set_target_properties() TARGET cpptoml-conversions not found
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/examples/CMakeLists.txt:24 set_target_properties(['cpptoml-conversions', 'PROPERTIES', 'CXX_STANDARD', '11', 'CXX_EXTENSIONS', 'OFF', 'CXX_STANDARD_REQUIRED', 'YES'])
CMake TARGET:
  -- name:      cpptoml
  -- type:      INTERFACE
  -- imported:  False
  -- properties: {
      'INCLUDE_DIRECTORIES': []
      'INTERFACE_INCLUDE_DIRECTORIES': ['/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/include', '']
      'LINK_LIBRARIES': []
      'INTERFACE_LINK_LIBRARIES': ['/Applications/Xcode_13.2.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk/usr/lib/libc++abi.tbd']
     }
  -- tline: CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/cpptoml/CMakeLists.txt:40 add_library(['cpptoml', 'INTERFACE'])
CMake project cpptoml has 5 build targets.

Processing generated meson AST
Build file: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/cpptoml/meson.build

Project name: cpptoml
Project version: undefined
C++ compiler for the host machine: x86_64-apple-darwin13.4.0-clang++ (clang 12.0.1 "clang version 12.0.1")
C++ linker for the host machine: x86_64-apple-darwin13.4.0-clang++ ld64 609
C++ compiler for the build machine: x86_64-apple-darwin13.4.0-clang++ (clang 12.0.1 "clang version 12.0.1")
C++ linker for the build machine: x86_64-apple-darwin13.4.0-clang++ ld64 609
WARNING: Please do not define rpath with a linker argument, use install_rpath
or build_rpath properties instead.
This will become a hard error in a future Meson release.

WARNING: Please do not define rpath with a linker argument, use install_rpath
or build_rpath properties instead.
This will become a hard error in a future Meson release.

WARNING: Please do not define rpath with a linker argument, use install_rpath
or build_rpath properties instead.
This will become a hard error in a future Meson release.

WARNING: Please do not define rpath with a linker argument, use install_rpath
or build_rpath properties instead.
This will become a hard error in a future Meson release.

Build targets in project: 4
Subproject cpptoml finished.


WARNING: You should add the boolean check kwarg to the run_command call.
         It currently defaults to false,
         but it will default to true in future releases of meson.
         See also: https://github.com/mesonbuild/meson/issues/9300
Running command: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/scripts/prepare-sdsl
--- stdout ---

--- stderr ---
sed: 1: "/set(CMAKE_BUILD_TYPE " ...": command a expects \ followed by text



Executing subproject sdsl-lite method cmake 

CMake binary for 0 is cached.

Configuring the build directory with CMake version 3.23.1
Running CMake with: -G Ninja -DCMAKE_INSTALL_PREFIX=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/install
  - build directory:          /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/sdsl-lite/__CMake_build
  - source directory:         /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite
  - toolchain file:           /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/sdsl-lite/__CMake_build/CMakeMesonToolchainFile.cmake
  - preload file:             /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/lib/python3.10/site-packages/mesonbuild/cmake/data/preload.cmake
  - trace args:               --trace-expand --trace-format=json-v1 --no-warn-unused-cli --trace-redirect=cmake_trace.txt
  - disabled policy warnings: [CMP0025, CMP0047, CMP0056, CMP0060, CMP0065, CMP0066, CMP0067, CMP0082, CMP0089, CMP0102]

Calling CMake (['/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/cmake']) in /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/sdsl-lite/__CMake_build with:
  - "-G"
  - "Ninja"
  - "-DCMAKE_INSTALL_PREFIX=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/install"
  - "--trace-expand"
  - "--trace-format=json-v1"
  - "--no-warn-unused-cli"
  - "--trace-redirect=cmake_trace.txt"
  - "-DCMAKE_POLICY_WARNING_CMP0025=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0047=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0056=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0060=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0065=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0066=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0067=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0082=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0089=OFF"
  - "-DCMAKE_POLICY_WARNING_CMP0102=OFF"
  - "-DCMAKE_TOOLCHAIN_FILE=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/sdsl-lite/__CMake_build/CMakeMesonToolchainFile.cmake"
  - "-DMESON_PRELOAD_FILE=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/lib/python3.10/site-packages/mesonbuild/cmake/data/preload.cmake"
  - "/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite"
  - "-DCMAKE_PREFIX_PATH=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p"
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.

Running with expanded trace output on.
Not searching for unused variables given on the command line.
Trace will be written to cmake_trace.txt

-- The CXX compiler identification is Clang 12.0.1
-- The C compiler identification is Clang 12.0.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/x86_64-apple-darwin13.4.0-clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/x86_64-apple-darwin13.4.0-clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Compiler is recent enough to support C++11.
-- Performing Test HAVE_CLANG_STD=C__11__DNDEBUG
-- Performing Test HAVE_CLANG_STD=C__11__DNDEBUG - Success
-- Performing Test HAVE_CLANG_STDLIB=LIBC__
-- Performing Test HAVE_CLANG_STDLIB=LIBC__ - Success
-- Performing Test HAVE_CLANG_O3__FFAST_MATH__FUNROLL_LOOPS__D__EXTERN_ALWAYS_INLINE="EXTERN___ALWAYS_INLINE"_
-- Performing Test HAVE_CLANG_O3__FFAST_MATH__FUNROLL_LOOPS__D__EXTERN_ALWAYS_INLINE="EXTERN___ALWAYS_INLINE"_ - Success
-- Performing Test HAVE_CXA_DEMANGLE
-- Performing Test HAVE_CXA_DEMANGLE - Failed
-- Could NOT find CxaDemangle (missing: HAVE_CXA_DEMANGLE) 
-- Found Git: /usr/local/miniconda/envs/bioconda/bin/git (found version "2.35.2") 
git found: /usr/local/miniconda/envs/bioconda/bin/git
CMake Deprecation Warning at external/libdivsufsort/CMakeLists.txt:2 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


CMake Warning (dev) at external/libdivsufsort/CMakeLists.txt:7 (project):
  Policy CMP0048 is not set: project() command manages VERSION variables.
  Run "cmake --help-policy CMP0048" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The following variable(s) would be set to empty:

    PROJECT_VERSION
    PROJECT_VERSION_MAJOR
    PROJECT_VERSION_MINOR
    PROJECT_VERSION_PATCH
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Performing Test HAVE_UNKNOWN_WALL
-- Performing Test HAVE_UNKNOWN_WALL - Success
-- Performing Test HAVE_UNKNOWN_FOMIT_FRAME_POINTER
-- Performing Test HAVE_UNKNOWN_FOMIT_FRAME_POINTER - Success
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Looking for memory.h
-- Looking for memory.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stdlib.h
-- Looking for stdlib.h - found
-- Looking for string.h
-- Looking for string.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Performing Test HAVE_INLINE
-- Performing Test HAVE_INLINE - Success
-- Performing Test HAVE___INLINE
-- Performing Test HAVE___INLINE - Success
-- Performing Test HAVE___INLINE__
-- Performing Test HAVE___INLINE__ - Success
-- Performing Test HAVE___DECLSPEC_DLLEXPORT_
-- Performing Test HAVE___DECLSPEC_DLLEXPORT_ - Failed
-- Performing Test HAVE___DECLSPEC_DLLIMPORT_
-- Performing Test HAVE___DECLSPEC_DLLIMPORT_ - Failed
-- Check size of uint8_t
-- Check size of uint8_t - done
CMake Warning (dev) at /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/share/cmake-3.23/Modules/CheckTypeSize.cmake:206 (set):
  Policy CMP0126 is not set: set(CACHE) does not remove a normal variable of
  the same name.  Run "cmake --help-policy CMP0126" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

  For compatibility with older versions of CMake, normal variable "UINT8_T"
  will be removed from the current scope.
Call Stack (most recent call first):
  /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/share/cmake-3.23/Modules/CheckTypeSize.cmake:277 (__check_type_size_impl)
  external/libdivsufsort/include/CMakeLists.txt:60 (check_type_size)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Check size of int32_t
-- Check size of int32_t - done
CMake Warning (dev) at /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/share/cmake-3.23/Modules/CheckTypeSize.cmake:206 (set):
  Policy CMP0126 is not set: set(CACHE) does not remove a normal variable of
  the same name.  Run "cmake --help-policy CMP0126" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

  For compatibility with older versions of CMake, normal variable "INT32_T"
  will be removed from the current scope.
Call Stack (most recent call first):
  /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/share/cmake-3.23/Modules/CheckTypeSize.cmake:277 (__check_type_size_impl)
  external/libdivsufsort/include/CMakeLists.txt:72 (check_type_size)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Looking for PRId32
-- Looking for PRId32 - found
-- Check size of int64_t
-- Check size of int64_t - done
CMake Warning (dev) at /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/share/cmake-3.23/Modules/CheckTypeSize.cmake:206 (set):
  Policy CMP0126 is not set: set(CACHE) does not remove a normal variable of
  the same name.  Run "cmake --help-policy CMP0126" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

  For compatibility with older versions of CMake, normal variable "INT64_T"
  will be removed from the current scope.
Call Stack (most recent call first):
  /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/share/cmake-3.23/Modules/CheckTypeSize.cmake:277 (__check_type_size_impl)
  external/libdivsufsort/include/CMakeLists.txt:104 (check_type_size)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Looking for PRId64
-- Looking for PRId64 - found
CMake Warning (dev) at external/googletest/googletest/CMakeLists.txt:47 (project):
  Policy CMP0048 is not set: project() command manages VERSION variables.
  Run "cmake --help-policy CMP0048" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  The following variable(s) would be set to empty:

    PROJECT_VERSION
    PROJECT_VERSION_MAJOR
    PROJECT_VERSION_MINOR
    PROJECT_VERSION_PATCH
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Deprecation Warning at external/googletest/googletest/CMakeLists.txt:48 (cmake_minimum_required):
  Compatibility with CMake < 2.8.12 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Found PythonInterp: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/bin/python (found version "3.8.13") 
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Looking for C++ include cstdio
-- Looking for C++ include cstdio - found
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) 
-- Configuring done
-- Generating done
-- Build files have been written to: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/sdsl-lite/__CMake_build

CMake configuration: SUCCEEDED
CMake trace warning: set() requires at least one argument
CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite/external/libdivsufsort/CMakeModules/CheckFunctionKeywords.cmake:4 set(['', ''])
CMake TARGET:
  -- name:      sdsl
  -- type:      NORMAL
  -- imported:  False
  -- properties: {
      'VERSION': ['2.1.0']
      'SOVERSION': ['3']
      'INCLUDE_DIRECTORIES': ['include']
      'INTERFACE_INCLUDE_DIRECTORIES': ['include']
     }
  -- tline: CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite/lib/CMakeLists.txt:14 add_library(['sdsl', 'bits.cpp;bp_support_algorithm.cpp;coder_elias_delta.cpp;coder_elias_gamma.cpp;coder_fibonacci.cpp;config.cpp;construct_config.cpp;construct_isa.cpp;construct_lcp.cpp;construct_lcp_helper.cpp;construct_sa.cpp;construct_sa_se.cpp;csa_alphabet_strategy.cpp;io.cpp;lcp_support_tree.cpp;louds_tree.cpp;memory_management.cpp;nn_dict_dynamic.cpp;ram_filebuf.cpp;ram_fs.cpp;rrr_vector_15.cpp;sd_vector.cpp;sfstream.cpp;structure_tree.cpp;uint128_t.cpp;uint256_t.cpp;util.cpp;wt_helper.cpp'])
CMake TARGET:
  -- name:      divsufsort
  -- type:      NORMAL
  -- imported:  False
  -- properties: {
      'VERSION': ['3.0.1']
      'SOVERSION': ['3']
      'DEFINE_SYMBOL': ['DIVSUFSORT_BUILD_DLL']
      'RUNTIME_OUTPUT_DIRECTORY': ['/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/sdsl-lite/__CMake_build/external/libdivsufsort/lib/../examples']
     }
  -- tline: CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite/external/libdivsufsort/lib/CMakeLists.txt:7 add_library(['divsufsort', 'divsufsort.c;sssort.c;trsort.c;utils.c'])
CMake TARGET:
  -- name:      divsufsort64
  -- type:      NORMAL
  -- imported:  False
  -- properties: {
      'VERSION': ['3.0.1']
      'SOVERSION': ['3']
      'DEFINE_SYMBOL': ['DIVSUFSORT_BUILD_DLL']
      'COMPILE_FLAGS': ['-DBUILD_DIVSUFSORT64']
      'RUNTIME_OUTPUT_DIRECTORY': ['/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/sdsl-lite/__CMake_build/external/libdivsufsort/lib/../examples']
     }
  -- tline: CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite/external/libdivsufsort/lib/CMakeLists.txt:20 add_library(['divsufsort64', 'divsufsort.c;sssort.c;trsort.c;utils.c'])
CMake TARGET:
  -- name:      gtest
  -- type:      NORMAL
  -- imported:  False
  -- properties: {
      'COMPILE_FLAGS': ['-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work=/usr/local/src/conda/tigmint-1.2.6 -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p=/usr/local/src/conda-prefix -std=c++11 -DNDEBUG -stdlib=libc++  -DGTEST_HAS_PTHREAD=1']
      'LINK_LIBRARIES': []
      'INTERFACE_LINK_LIBRARIES': []
      'INCLUDE_DIRECTORIES': []
      'INTERFACE_INCLUDE_DIRECTORIES': ['/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite/external/googletest/googletest/include']
     }
  -- tline: CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite/external/googletest/googletest/cmake/internal_utils.cmake:151 add_library(['gtest', '', 'src/gtest-all.cc'])
CMake TARGET:
  -- name:      gtest_main
  -- type:      NORMAL
  -- imported:  False
  -- properties: {
      'COMPILE_FLAGS': ['-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work=/usr/local/src/conda/tigmint-1.2.6 -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p=/usr/local/src/conda-prefix -std=c++11 -DNDEBUG -stdlib=libc++  -DGTEST_HAS_PTHREAD=1']
      'LINK_LIBRARIES': ['gtest']
      'INTERFACE_LINK_LIBRARIES': ['gtest']
      'INCLUDE_DIRECTORIES': []
      'INTERFACE_INCLUDE_DIRECTORIES': ['/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite/external/googletest/googletest/include']
     }
  -- tline: CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite/external/googletest/googletest/cmake/internal_utils.cmake:151 add_library(['gtest_main', '', 'src/gtest_main.cc'])
CMake TARGET:
  -- name:      gtest
  -- type:      NORMAL
  -- imported:  False
  -- properties: {
      'COMPILE_FLAGS': ['-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work=/usr/local/src/conda/tigmint-1.2.6 -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p=/usr/local/src/conda-prefix -std=c++11 -DNDEBUG -stdlib=libc++  -DGTEST_HAS_PTHREAD=1']
      'LINK_LIBRARIES': []
      'INTERFACE_LINK_LIBRARIES': []
      'INCLUDE_DIRECTORIES': []
      'INTERFACE_INCLUDE_DIRECTORIES': ['/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite/external/googletest/googletest/include']
     }
  -- tline: CMake TRACE: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/subprojects/sdsl-lite/external/googletest/googletest/cmake/internal_utils.cmake:151 add_library(['gtest', '', 'src/gtest-all.cc'])
CMake project sdsl has 7 build targets.

Processing generated meson AST
Build file: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/subprojects/sdsl-lite/meson.build

Project name: sdsl
Project version: undefined
Sanity testing C compiler: x86_64-apple-darwin13.4.0-clang
Is cross compiler: False.
Sanity check compiler command line: x86_64-apple-darwin13.4.0-clang sanitycheckc.c -o sanitycheckc.exe -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work=/usr/local/src/conda/tigmint-1.2.6 -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -mmacosx-version-min=10.9 -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib -L/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib
Sanity check compile stdout:

-----
Sanity check compile stderr:

-----
Running test binary command: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/sanitycheckc.exe
C compiler for the host machine: x86_64-apple-darwin13.4.0-clang (clang 12.0.1 "clang version 12.0.1")
C linker for the host machine: x86_64-apple-darwin13.4.0-clang ld64 609
C++ compiler for the host machine: x86_64-apple-darwin13.4.0-clang++ (clang 12.0.1 "clang version 12.0.1")
C++ linker for the host machine: x86_64-apple-darwin13.4.0-clang++ ld64 609
Sanity testing C compiler: x86_64-apple-darwin13.4.0-clang
Is cross compiler: False.
Sanity check compiler command line: x86_64-apple-darwin13.4.0-clang sanitycheckc.c -o sanitycheckc.exe -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work=/usr/local/src/conda/tigmint-1.2.6 -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -mmacosx-version-min=10.9 -Wl,-pie -Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib -L/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib
Sanity check compile stdout:

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Sanity check compile stderr:

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Running test binary command: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/sanitycheckc.exe
C compiler for the build machine: x86_64-apple-darwin13.4.0-clang (clang 12.0.1 "clang version 12.0.1")
C linker for the build machine: x86_64-apple-darwin13.4.0-clang ld64 609
C++ compiler for the build machine: x86_64-apple-darwin13.4.0-clang++ (clang 12.0.1 "clang version 12.0.1")
C++ linker for the build machine: x86_64-apple-darwin13.4.0-clang++ ld64 609
Build targets in project: 11
Subproject sdsl-lite finished.


Program samtools found: NO
Program gzip found: YES (/usr/bin/gzip)
Program xz found: YES (/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/xz)
Program bzip2 found: YES (/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/bzip2)
Program tar found: YES (/usr/bin/tar)
Program swig found: YES (/usr/local/bin/swig)
Program doxygen found: NO
Running command: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/scripts/get-files src
--- stdout ---
/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/seq_reader_multiline_fasta_module.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/util.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/cstring.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/seq_writer.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/seq_reader_sam_module.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/status.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/bloom_filter.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/seq.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/seq_reader.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/seq_reader_fasta_module.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/nthash.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/data_stream.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/seq_reader_fastq_module.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/nthash_consts.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/seq_reader_multiline_fastq_module.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/process_pipeline.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/seq_reader_gfa2_module.cpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/src/btllib/nthash_lowlevel.cpp 
--- stderr ---


Running command: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/../scripts/get-files include
--- stdout ---
/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/seq_reader_multiline_fastq_module.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/process_pipeline.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/mi_bloom_filter.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/nthash_lowlevel.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/seq_reader_gfa2_module.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/data_stream.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/seq_reader_fastq_module.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/nthash_consts.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/order_queue.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/indexlr.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/status.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/counting_bloom_filter.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/graph.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/bloom_filter.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/seq.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/seq_reader.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/seq_reader_fasta_module.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/nthash.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/seq_reader_multiline_fasta_module.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/util.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/cstring.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/seq_writer.hpp /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/include/btllib/seq_reader_sam_module.hpp 
--- stderr ---


Program python3 found: YES (/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/python3)
Program python3-config found: YES (/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/python3-config)
Running command: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/wrappers/python/../../scripts/get-python-flags
--- stdout ---
SUCCESS
-I/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/include/python3.10 -I/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/include/python3.10 -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/include -fPIC -O2 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/include
-L/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/lib/python3.10/config-3.10-darwin -ldl -framework CoreFoundation

--- stderr ---


Running command: /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/recipes/../scripts/get-files recipes
--- stdout ---
/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/recipes/indexlr.cpp 
--- stderr ---


Build targets in project: 21

btllib 1.4.1

  Subprojects
    cpptoml  : YES 4 warnings
    sdsl-lite: YES

  User defined options
    buildtype: release
    prefix   : /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/install

Found ninja-1.10.2 at /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin/ninja
Running compile:
Working directory:  /tmp/tmp37xhe2n1
Command line:  x86_64-apple-darwin13.4.0-clang++ /tmp/tmp37xhe2n1/testfile.cpp -o /tmp/tmp37xhe2n1/output.obj -c -std=c++11 

Code:
 int i = static_cast<int>(0);
Compiler stdout:
 
Compiler stderr:
 
Compiler accepts -std=c++11: YES
Running compile:
Working directory:  /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/tmp60jopfra
Command line:  x86_64-apple-darwin13.4.0-clang++ /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/tmp60jopfra/testfile.cpp -o /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/__build-compile/meson-private/tmp60jopfra/output.obj -c -march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work=/usr/local/src/conda/tigmint-1.2.6 -fdebug-prefix-map=/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p=/usr/local/src/conda-prefix -D_FORTIFY_SOURCE=2 -isystem /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/include -mmacosx-version-min=10.9 -O0 -fpermissive -Werror=implicit-function-declaration -Werror=unknown-warning-option -Werror=unused-command-line-argument -Werror=ignored-optimization-argument --print-search-dirs 

Code:
 
Compiler stdout:
 programs: =/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/bin
libraries: =/usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/_build_env/lib/clang/12.0.1

Compiler stderr:
 
Failed to guess install tag for /usr/local/miniconda/envs/bioconda/conda-bld/tigmint_1649868529488/work/src/btllib/install/python/btllib.py
