Dockerfile
HISTORY.md
LICENSE.txt
MANIFEST.in
README.md
VERSION.txt
requirements.txt
setup.cfg
setup.py
workflow.cwl
TargQC.egg-info/PKG-INFO
TargQC.egg-info/SOURCES.txt
TargQC.egg-info/dependency_links.txt
TargQC.egg-info/not-zip-safe
TargQC.egg-info/requires.txt
TargQC.egg-info/top_level.txt
bed_annotation/__init__.py
bed_annotation/bed_annotation.py
ensembl/__init__.py
ensembl/canon_cancer_replacement.txt
ensembl/hg19/canon_transcripts_hg19_ensembl.txt
ensembl/hg19/ensembl.bed.gz
ensembl/hg19/ensembl.bed.gz.tbi
ensembl/hg38/canon_transcripts_hg38_ensembl.txt
ensembl/hg38/ensembl.bed.gz
ensembl/hg38/ensembl.bed.gz.tbi
ngs_utils/Sample.py
ngs_utils/__init__.py
ngs_utils/bam_utils.py
ngs_utils/bed_utils.py
ngs_utils/call_process.py
ngs_utils/config.py
ngs_utils/file_utils.py
ngs_utils/gtf.py
ngs_utils/logger.py
ngs_utils/parallel.py
ngs_utils/proc_args.py
ngs_utils/sambamba.py
ngs_utils/setup_utils.py
ngs_utils/testing.py
ngs_utils/utils.py
ngs_utils/bed_venn/__init__.py
ngs_utils/bed_venn/venn.py
ngs_utils/jsontemplate/__init__.py
ngs_utils/jsontemplate/_jsontemplate.py
ngs_utils/jsontemplate/datadict.py
ngs_utils/jsontemplate/formatters.py
ngs_utils/jsontemplate/highlight.py
ngs_utils/reference_data/__init__.py
ngs_utils/reporting/__init__.py
ngs_utils/reporting/reporting.py
scripts/annotate_bed.py
scripts/bed_venn.py
scripts/generate_cds_bed.py
scripts/generate_ensembl_data.py
scripts/targqc
targqc/.DS_Store
targqc/Target.py
targqc/__init__.py
targqc/config.py
targqc/fastq.py
targqc/general_report.py
targqc/prep_bed.py
targqc/region_coverage.py
targqc/summarize.py
targqc/version.py
targqc/gender/chrY.hg19.bed
targqc/gender/chrY.hg38.bed
targqc/qualimap/.DS_Store
targqc/qualimap/__init__.py
targqc/qualimap/report_parser.py
targqc/qualimap/runner.py
tests/__init__.py
tests/test.py
tests/test_annotate_bed.py
tests/test_travis.py