bin/clone_filter
bin/convert_stacks.pl
bin/count_fixed_catalog_snps.py
bin/cstacks
bin/denovo_map.pl
bin/extract_interpop_chars.pl
bin/gstacks
bin/integrate_alignments.py
bin/kmer_filter
bin/phasedstacks
bin/populations
bin/process_radtags
bin/process_shortreads
bin/ref_map.pl
bin/ref_map.pl-e
bin/sstacks
bin/stacks-dist-extract
bin/stacks-gdb
bin/stacks-integrate-alignments
bin/tsv2bam
bin/ustacks
share/stacks/php/CatalogClass.php
share/stacks/php/Locus.php
share/stacks/php/ajax.js
share/stacks/php/annotate.js
share/stacks/php/annotate_marker.php
share/stacks/php/catalog.php
share/stacks/php/catalog_genotypes.php
share/stacks/php/constants.php.dist
share/stacks/php/correct_genotype.php
share/stacks/php/correct_genotypes.php
share/stacks/php/db_functions.php
share/stacks/php/export.js
share/stacks/php/export_batch.php
share/stacks/php/fst_view.php
share/stacks/php/hapstat_view.php
share/stacks/php/header.php
share/stacks/php/images/caret-d.png
share/stacks/php/images/caret-u.png
share/stacks/php/images/excel_icon.png
share/stacks/php/images/l-arrow-disabled.png
share/stacks/php/images/l-arrow.png
share/stacks/php/images/r-arrow-disabled.png
share/stacks/php/images/r-arrow.png
share/stacks/php/images/stacks_bg.png
share/stacks/php/images/stacks_logo_rev_small.png
share/stacks/php/index.php
share/stacks/php/last_modified.php
share/stacks/php/phist_view.php
share/stacks/php/pop_view.php
share/stacks/php/population_view.js
share/stacks/php/samples.php
share/stacks/php/sequence_blast.php
share/stacks/php/stack_view.php
share/stacks/php/stacks.css
share/stacks/php/stacks.js
share/stacks/php/stacks_functions.php
share/stacks/php/sumstat_view.php
share/stacks/php/tag.php
share/stacks/php/tags.php
share/stacks/php/version.php
share/stacks/php/view_sequence.php
share/stacks/sql/catalog_index.sql
share/stacks/sql/chr_index.sql
share/stacks/sql/mysql.cnf.dist
share/stacks/sql/stacks.sql
share/stacks/sql/tag_index.sql
