# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /Users/distiller/project/recipes/stacks/2.3, last modified Wed Jan 30 08:39:08 2019
# ------------------------------------------------

package:
    name: stacks
    version: '2.3'
source:
    patches:
        - at.patch
    sha256: 2a5befaf11ca2f191afcd42a3a3392290d6a116d7fe737b69a2c4d5b77f40c99
    url: http://catchenlab.life.illinois.edu/stacks/source/stacks-2.3.tar.gz
build:
    number: '3'
    string: h5c9b4e4_3
requirements:
    build:
        - cctools 895 h7512d6f_0
        - clang 4.0.1 h662ec87_0
        - clang_osx-64 4.0.1 h1ce6c1d_11
        - clangxx 4.0.1 hc9b4283_0
        - clangxx_osx-64 4.0.1 h22b1bf0_11
        - compiler-rt 4.0.1 h5487866_0
        - ld64 274.2 h7c2db76_0
        - libcxx 4.0.1 h579ed51_0
        - libcxxabi 4.0.1 hebd6815_0
        - llvm 4.0.1 hc748206_0
        - llvm-lto-tapi 4.0.1 h6701bc3_0
    host:
        - libcxx 7.0.0 h2d50403_2
        - llvm-meta 7.0.0 0
        - zlib 1.2.11 h470a237_4
    run:
        - libcxx >=4.0.1
        - perl
        - perl-bioperl-core
        - perl-file-spec
        - perl-file-temp
        - perl-posix
        - python >=3
        - samtools
        - velvet
        - zlib >=1.2.11,<1.3.0a0
        - zlib >=1.2.11,<1.3.0a0
test:
    commands:
        - command -v cstacks
        - command -v gstacks
        - command -v sstacks
        - command -v ustacks
        - command -v phasedstacks
        - command -v populations
        - command -v process_radtags
        - command -v process_shortreads
        - command -v clone_filter
        - command -v kmer_filter
        - command -v stacks-dist-extract
        - command -v stacks-integrate-alignments
        - command -v tsv2bam
        - command -v convert_stacks.pl
        - command -v count_fixed_catalog_snps.py
        - command -v denovo_map.pl
        - command -v extract_interpop_chars.pl
        - command -v integrate_alignments.py
        - command -v ref_map.pl
about:
    home: http://catchenlab.life.illinois.edu/stacks/
    license: GPL
    summary: Stacks is a software pipeline for building loci from RAD-seq
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:Stacks
        - doi:10.1111/mec.12354
