# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /Users/distiller/project/recipes/spliced_bam2gff, last modified Thu Jan 21 05:20:00 2021
# ------------------------------------------------

package:
    name: spliced_bam2gff
    version: '1.3'
source:
    -   folder: src/github.com/nanoporetech/spliced_bam2gff
        sha256: 23e9ffda9751a3198177b40d8427efdd692a7a5316a56a0781a15c68a866f5ef
        url: https://github.com/nanoporetech/spliced_bam2gff/archive/v1.3.tar.gz
build:
    binary_relocation: false
    number: '0'
    script:
        - pushd src/github.com/nanoporetech/spliced_bam2gff
        - export GOPATH=`readlink -f src/github.com/nanoporetech/spliced_bam2gff/gopath`
        - pwd -P
        - go get -v -u github.com/biogo/biogo/feat
        - go get -v -u github.com/biogo/hts/bam
        - go build -v
        - mkdir -p /Users/distiller/project/miniconda/conda-bld/spliced_bam2gff_1611235390024/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/bin
        - cp spliced_bam2gff /Users/distiller/project/miniconda/conda-bld/spliced_bam2gff_1611235390024/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/bin
    string: h375a9b1_0
requirements:
    build:
        - _go_select 2.2.0 nocgo
        - go 1.13.15 hffca979_0
        - go-nocgo_osx-64 1.13.15 h8447bf8_0
test:
    commands:
        - spliced_bam2gff -h
about:
    description: 'The spliced_bam2gff tool converts BAM alignments, produced by spliced
        aligners (such as minimap2, gmap), into a GFF2 format.


        By default, introns are created based on the N cigar feature. Alternatively,
        if -d (i.e. for deletion) is specified, any deletions larger than the limit
        will be classified as an intron. The orientation of the GFF2 features is determined
        by the XS strand tag and SAM flags depending on the aligner.


        The tool supports splitting the output into loci and bundles of loci with
        a minimum number of features, which enables easy parallelisation of downstream
        analyses.

        '
    dev_url: https://github.com/nanoporetech/spliced_bam2gff
    doc_url: https://github.com/nanoporetech/spliced_bam2gff
    home: https://github.com/nanoporetech/spliced_bam2gff
    license: MPL-2
    license_family: MOZILLA
    license_file: src/github.com/nanoporetech/spliced_bam2gff/LICENSE.md
    summary: A tool to convert spliced BAM alignments into GFF2 format
extra:
    copy_test_source_files: true
    final: true
    skip-lints:
        - should_be_noarch_generic
        - should_not_be_noarch_source
