mode    plasmid

plasmid 
{
;isolated
    long_edge_length 1000
    edge_length_for_median 10000
    relative_coverage 0.3
    small_component_size 10000
    small_component_relative_coverage 1.5
    min_component_length 10000
    min_isolated_length 1000
;   reference_removal replace this with path to reference and uncomment for reference based filtration
;meta
    iterative_coverage_elimination true
    additive_step 5
    relative_step 1.3
    max_length 1000000
    output_linear false
    min_circular_length 1000
    min_linear_length 500
}
