mode    plasmid

plasmid 
{
;isolated
    long_edge_length 1000
    edge_length_for_median 10000
    relative_coverage 0.3
    small_component_size 10000
    small_component_relative_coverage 1.5
    min_component_length 10000
    min_isolated_length 1000
;meta
    meta_mode true
    absolute_coverage_cutoff 5
;circular_removal
    min_start_edge_length 2000
    min_start_coverage 20
    max_loop 150000
;   reference_removal replace this with path to reference and uncomment for reference based filtration
;iterative_coverage_elimination
    iterative_coverage_elimination true
    additive_step 5
    relative_step 1.3
    max_length 1000000
}
