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  cd $SRC_DIR/build/lib/mmseqs/src && $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I$SRC_DIR/lib/mmseqs/lib/zstd/lib -I$SRC_DIR/lib/mmseqs/lib/tinyexpr -I$SRC_DIR/lib/mmseqs/lib/microtar -I$SRC_DIR/lib/mmseqs/lib/simde -I$SRC_DIR/lib/mmseqs/lib -I$SRC_DIR/lib/mmseqs/lib/simd -I$SRC_DIR/lib/mmseqs/lib/gzstream -I$SRC_DIR/lib/mmseqs/lib/alp -I$SRC_DIR/lib/mmseqs/lib/cacode -I$SRC_DIR/lib/mmseqs/lib/ksw2 -I$SRC_DIR/lib/mmseqs/lib/xxhash -I$SRC_DIR/lib/mmseqs/lib/ips4o -I$SRC_DIR/build/generated -I$SRC_DIR/build/lib/mmseqs/generated -I$SRC_DIR/lib/mmseqs/src/alignment -I$SRC_DIR/lib/mmseqs/src/clustering -I$SRC_DIR/lib/mmseqs/src/commons -I$SRC_DIR/lib/mmseqs/src/multihit -I$SRC_DIR/lib/mmseqs/src/prefiltering -I$SRC_DIR/lib/mmseqs/src/linclust -I$SRC_DIR/lib/mmseqs/src/taxonomy -I$SRC_DIR/lib/mmseqs/src/util -I$SRC_DIR/lib/mmseqs/src/. -fvisibility-inlines-hidden -fmessage-length=0 -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/spacepharer-5.c2e680a -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -DNDEBUG  -fsigned-char  -march=armv8-asimd -D_GNU_SOURCE=1 -std=c1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c $SRC_DIR/lib/mmseqs/src/alignment/MsaFilter.cpp
  [ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o
  cd $SRC_DIR/build/lib/mmseqs/src && $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I$SRC_DIR/lib/mmseqs/lib/zstd/lib -I$SRC_DIR/lib/mmseqs/lib/tinyexpr -I$SRC_DIR/lib/mmseqs/lib/microtar -I$SRC_DIR/lib/mmseqs/lib/simde -I$SRC_DIR/lib/mmseqs/lib -I$SRC_DIR/lib/mmseqs/lib/simd -I$SRC_DIR/lib/mmseqs/lib/gzstream -I$SRC_DIR/lib/mmseqs/lib/alp -I$SRC_DIR/lib/mmseqs/lib/cacode -I$SRC_DIR/lib/mmseqs/lib/ksw2 -I$SRC_DIR/lib/mmseqs/lib/xxhash -I$SRC_DIR/lib/mmseqs/lib/ips4o -I$SRC_DIR/build/generated -I$SRC_DIR/build/lib/mmseqs/generated -I$SRC_DIR/lib/mmseqs/src/alignment -I$SRC_DIR/lib/mmseqs/src/clustering -I$SRC_DIR/lib/mmseqs/src/commons -I$SRC_DIR/lib/mmseqs/src/multihit -I$SRC_DIR/lib/mmseqs/src/prefiltering -I$SRC_DIR/lib/mmseqs/src/linclust -I$SRC_DIR/lib/mmseqs/src/taxonomy -I$SRC_DIR/lib/mmseqs/src/util -I$SRC_DIR/lib/mmseqs/src/. -fvisibility-inlines-hidden -fmessage-length=0 -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/spacepharer-5.c2e680a -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -DNDEBUG  -fsigned-char  -march=armv8-asimd -D_GNU_SOURCE=1 -std=c1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c $SRC_DIR/lib/mmseqs/src/alignment/MultipleAlignment.cpp
  [ 38%] Building CXX object lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o
  cd $SRC_DIR/build/lib/mmseqs/src && $BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I$SRC_DIR/lib/mmseqs/lib/zstd/lib -I$SRC_DIR/lib/mmseqs/lib/tinyexpr -I$SRC_DIR/lib/mmseqs/lib/microtar -I$SRC_DIR/lib/mmseqs/lib/simde -I$SRC_DIR/lib/mmseqs/lib -I$SRC_DIR/lib/mmseqs/lib/simd -I$SRC_DIR/lib/mmseqs/lib/gzstream -I$SRC_DIR/lib/mmseqs/lib/alp -I$SRC_DIR/lib/mmseqs/lib/cacode -I$SRC_DIR/lib/mmseqs/lib/ksw2 -I$SRC_DIR/lib/mmseqs/lib/xxhash -I$SRC_DIR/lib/mmseqs/lib/ips4o -I$SRC_DIR/build/generated -I$SRC_DIR/build/lib/mmseqs/generated -I$SRC_DIR/lib/mmseqs/src/alignment -I$SRC_DIR/lib/mmseqs/src/clustering -I$SRC_DIR/lib/mmseqs/src/commons -I$SRC_DIR/lib/mmseqs/src/multihit -I$SRC_DIR/lib/mmseqs/src/prefiltering -I$SRC_DIR/lib/mmseqs/src/linclust -I$SRC_DIR/lib/mmseqs/src/taxonomy -I$SRC_DIR/lib/mmseqs/src/util -I$SRC_DIR/lib/mmseqs/src/. -fvisibility-inlines-hidden -fmessage-length=0 -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/spacepharer-5.c2e680a -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -O3 -DNDEBUG  -fsigned-char  -march=armv8-asimd -D_GNU_SOURCE=1 -std=c1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c $SRC_DIR/lib/mmseqs/src/alignment/PSSMCalculator.cpp
  In file included from /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Debug.h:5,
                   from /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/alignment/MsaFilter.cpp:5:
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Util.h:89:12: error: 'uint64_t' does not name a type
     89 |     static uint64_t getL2CacheSize();
        |            ^~~~~~~~
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Util.h:11:1: note: 'uint64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
     10 | #include "MMseqsMPI.h"
     |#include <cstdint>
     11 |
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Util.h:330:12: error: 'uint64_t' does not name a type
    330 |     static uint64_t revComplement(const uint64_t kmer, const int k);
        |            ^~~~~~~~
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Util.h:330:12: note: 'uint64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Debug.h: In constructor 'Debug::Progress::Progress()':
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Debug.h:169:69: error: 'SIZE_MAX' was not declared in this scope
    169 |         Progress() : currentPos(0),  prevPrintedId(0), totalEntries(SIZE_MAX){
        |                                                                     ^~~~~~~~
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Debug.h:12:1: note: 'SIZE_MAX' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
     11 | #include <sys/stat.h>
     |#include <cstdint>
     12 |
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Debug.h: In member function 'void Debug::Progress::updateProgress()':
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Debug.h:184:34: error: 'SIZE_MAX' was not declared in this scope
    184 |                 if(totalEntries==SIZE_MAX) {
        |                                  ^~~~~~~~
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Debug.h:184:34: note: 'SIZE_MAX' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Debug.h:218:34: error: 'SIZE_MAX' was not declared in this scope
    218 |                 if(totalEntries==SIZE_MAX){
        |                                  ^~~~~~~~
  /opt/conda/conda-bld/spacepharer_1733933969055/work/lib/mmseqs/src/commons/Debug.h:218:34: note: 'SIZE_MAX' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
  make[2]: *** [lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/build.make:135: lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o] Error 1
  make[2]: *** Waiting for unfinished jobs....
  make[2]: Leaving directory '$SRC_DIR/build'
  make[1]: *** [CMakeFiles/Makefile2:957: lib/mmseqs/src/CMakeFiles/mmseqs-framework.dir/all] Error 2
  make[1]: Leaving directory '$SRC_DIR/build'
  make: *** [Makefile:136: all] Error 2
  Traceback (most recent call last):
    File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2558, in build
      utils.check_call_env(
    File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 404, in check_call_env
      return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
    File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 380, in _func_defaulting_env_to_os_environ
      raise subprocess.CalledProcessError(proc.returncode, _args)
  subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/spacepharer_1733933969055/work/conda_build.sh']' returned non-zero exit status 2.

  The above exception was the direct cause of the following exception:

  Traceback (most recent call last):
    File "/opt/conda/bin/conda-build", line 11, in <module>
      sys.exit(execute())
    File "/opt/conda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 589, in execute
      api.build(
    File "/opt/conda/lib/python3.10/site-packages/conda_build/api.py", line 209, in build
      return build_tree(
    File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3712, in build_tree
      packages_from_this = build(
    File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2566, in build
      raise BuildScriptException(str(exc), caused_by=exc) from exc
  conda_build.exceptions.BuildScriptException: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/spacepharer_1733933969055/work/conda_build.sh']' returned non-zero exit status 2.
# Last 100 lines of the build log.
