bin/snpEff
share/snpeff-4.3-1/SnpSift.jar
share/snpeff-4.3-1/examples/1kg.head_chr1.filtered.vcf.gz
share/snpeff-4.3-1/examples/1kg.head_chr1.vcf.gz
share/snpeff-4.3-1/examples/cancer.ann.vcf
share/snpeff-4.3-1/examples/cancer.eff.vcf
share/snpeff-4.3-1/examples/cancer.vcf
share/snpeff-4.3-1/examples/cancer_pedigree.ann.vcf
share/snpeff-4.3-1/examples/cancer_pedigree.vcf
share/snpeff-4.3-1/examples/example_motif.vcf
share/snpeff-4.3-1/examples/examples.sh
share/snpeff-4.3-1/examples/file.vcf
share/snpeff-4.3-1/examples/intervals.bed
share/snpeff-4.3-1/examples/my_annotations.bed
share/snpeff-4.3-1/examples/samples_cancer.txt
share/snpeff-4.3-1/examples/samples_cancer_one.txt
share/snpeff-4.3-1/examples/test.1KG.ann_encode.vcf
share/snpeff-4.3-1/examples/test.1KG.ann_reg.vcf
share/snpeff-4.3-1/examples/test.1KG.vcf
share/snpeff-4.3-1/examples/test.ann.vcf
share/snpeff-4.3-1/examples/test.chr22.ann.filter_missense.vcf
share/snpeff-4.3-1/examples/test.chr22.ann.filter_missense_any.vcf
share/snpeff-4.3-1/examples/test.chr22.ann.filter_missense_any_TRMT2A.vcf
share/snpeff-4.3-1/examples/test.chr22.ann.filter_missense_first.vcf
share/snpeff-4.3-1/examples/test.chr22.ann.one_per_line.txt
share/snpeff-4.3-1/examples/test.chr22.ann.txt
share/snpeff-4.3-1/examples/test.chr22.ann.vcf
share/snpeff-4.3-1/examples/test.chr22.vcf
share/snpeff-4.3-1/examples/test.vcf
share/snpeff-4.3-1/examples/variants_1.ann.vcf
share/snpeff-4.3-1/examples/variants_1.vcf
share/snpeff-4.3-1/examples/variants_2.ann.vcf
share/snpeff-4.3-1/examples/variants_2.vcf
share/snpeff-4.3-1/galaxy/tool-data/snpEff_genomes.loc
share/snpeff-4.3-1/galaxy/tool-data/snpEff_genomes.loc.sample
share/snpeff-4.3-1/scripts/1kg.sh
share/snpeff-4.3-1/scripts/annotate_demo.sh
share/snpeff-4.3-1/scripts/annotate_demo_GATK.sh
share/snpeff-4.3-1/scripts/bedEffOnePerLine.pl
share/snpeff-4.3-1/scripts/buildDbNcbi.sh
share/snpeff-4.3-1/scripts/cgShore.pl
share/snpeff-4.3-1/scripts/cgShore.sh
share/snpeff-4.3-1/scripts/countColumns.py
share/snpeff-4.3-1/scripts/db.pl
share/snpeff-4.3-1/scripts/extractSequences.pl
share/snpeff-4.3-1/scripts/fasta2tab.pl
share/snpeff-4.3-1/scripts/fastaSample.pl
share/snpeff-4.3-1/scripts/fastaSplit.pl
share/snpeff-4.3-1/scripts/fastqSplit.pl
share/snpeff-4.3-1/scripts/filterBy.py
share/snpeff-4.3-1/scripts/gffRemovePhase.pl
share/snpeff-4.3-1/scripts/gsa/bayesFactor_correction_scoreCount.r
share/snpeff-4.3-1/scripts/gsa/bayesFactor_correction_scoreCount.sh
share/snpeff-4.3-1/scripts/gsa/bayesFactor_correction_scoreCount_max10.sh
share/snpeff-4.3-1/scripts/gsa/checkGeneNames.py
share/snpeff-4.3-1/scripts/gsa/create_sets.bds
share/snpeff-4.3-1/scripts/gsa/geneSetOverlap.py
share/snpeff-4.3-1/scripts/gsa/geneSetOverlap.sort.txt
share/snpeff-4.3-1/scripts/gsa/geneSetsGtex.py
share/snpeff-4.3-1/scripts/gsa/pvalue_correction_scoreCount.r
share/snpeff-4.3-1/scripts/gsa/pvalue_correction_scoreCount.sh
share/snpeff-4.3-1/scripts/gsa/pvalue_correction_scoreCount_min10.sh
share/snpeff-4.3-1/scripts/isutf8.py
share/snpeff-4.3-1/scripts/join.pl
share/snpeff-4.3-1/scripts/joinSnpEff.pl
share/snpeff-4.3-1/scripts/make_dbNSFP.sh
share/snpeff-4.3-1/scripts/nextProt_filter.pl
share/snpeff-4.3-1/scripts/ped2vcf.py
share/snpeff-4.3-1/scripts/plot.pl
share/snpeff-4.3-1/scripts/plotHistogram.pl
share/snpeff-4.3-1/scripts/plotLabel.pl
share/snpeff-4.3-1/scripts/plotMA.pl
share/snpeff-4.3-1/scripts/plotQQ.pl
share/snpeff-4.3-1/scripts/plotQQsubsample.pl
share/snpeff-4.3-1/scripts/plotSmoothScatter.pl
share/snpeff-4.3-1/scripts/plotXY.pl
share/snpeff-4.3-1/scripts/queue.pl
share/snpeff-4.3-1/scripts/sam2fastq.pl
share/snpeff-4.3-1/scripts/snpEff
share/snpeff-4.3-1/scripts/snpSift_filter_sample_to_number.pl
share/snpeff-4.3-1/scripts/sortLine.py
share/snpeff-4.3-1/scripts/splitChr.pl
share/snpeff-4.3-1/scripts/statsNum.pl
share/snpeff-4.3-1/scripts/swapCols.pl
share/snpeff-4.3-1/scripts/transpose.pl
share/snpeff-4.3-1/scripts/txt2fa.pl
share/snpeff-4.3-1/scripts/txt2vcf.py
share/snpeff-4.3-1/scripts/uniqCount.pl
share/snpeff-4.3-1/scripts/uniqCut.pl
share/snpeff-4.3-1/scripts/vcfAnnFirst.py
share/snpeff-4.3-1/scripts/vcfBareBones.pl
share/snpeff-4.3-1/scripts/vcfEffHighest.ORI.py
share/snpeff-4.3-1/scripts/vcfEffOnePerLine.pl
share/snpeff-4.3-1/scripts/vcfFilterSamples.pl
share/snpeff-4.3-1/scripts/vcfInfoOnePerLine.pl
share/snpeff-4.3-1/scripts/vcfOnlyAlts.pl
share/snpeff-4.3-1/scripts/vcfReduceGenotypes.pl
share/snpeff-4.3-1/scripts/vcfRefCorrect.py
share/snpeff-4.3-1/scripts/wigSplit.pl
share/snpeff-4.3-1/snpEff
share/snpeff-4.3-1/snpEff.config
share/snpeff-4.3-1/snpEff.jar
