CONTRIBUTING.rst
LICENSE
MANIFEST.in
README.rst
requirements.txt
requirements_dev.txt
requirements_pipelines.txt
requirements_pipelines_extra.txt
setup.cfg
setup.py
doc/minimalist.rules
doc/minimalist2.rules
doc/toy.rules
doc/build/html/_downloads/minimalist.rules
doc/build/html/_downloads/minimalist2.rules
doc/test/minimalist.rules
examples/README.txt
examples/plot_bam.py
examples/plot_coverage.py
examples/plot_fastqc_hist.py
examples/plot_kraken.py
examples/plot_pipeline_stats.py
examples/plot_qc_pacbio.py
examples/plot_running_median.py
sequana/__init__.py
sequana/adapters.py
sequana/assembly.py
sequana/bamtools.py
sequana/bedtools.py
sequana/busco.py
sequana/cigar.py
sequana/coverage.py
sequana/databases.py
sequana/datatools.py
sequana/errors.py
sequana/expdesign.py
sequana/fasta.py
sequana/fastq.py
sequana/freebayes_bcf_filter.py
sequana/freebayes_vcf_filter.py
sequana/iotools.py
sequana/jsontool.py
sequana/kmer.py
sequana/kraken.py
sequana/kraken_builder.py
sequana/krona.py
sequana/lazy.py
sequana/lazyimports.py
sequana/misc.py
sequana/pacbio.py
sequana/phred.py
sequana/running_median.py
sequana/sequence.py
sequana/simulation.py
sequana/snaketools.py
sequana/snpeff.py
sequana/stats.py
sequana/tools.py
sequana.egg-info/PKG-INFO
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sequana/modules_report/bwa_bam_to_fastq.py
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