<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
<BlastOutput>
  <BlastOutput_program>blastn</BlastOutput_program>
  <BlastOutput_version>BLASTN 2.2.31+</BlastOutput_version>
  <BlastOutput_reference>Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), &quot;A greedy algorithm for aligning DNA sequences&quot;, J Comput Biol 2000; 7(1-2):203-14.</BlastOutput_reference>
  <BlastOutput_db>db/measles.fasta</BlastOutput_db>
  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
  <BlastOutput_query-def>test1</BlastOutput_query-def>
  <BlastOutput_query-len>101</BlastOutput_query-len>
  <BlastOutput_param>
    <Parameters>
      <Parameters_expect>10</Parameters_expect>
      <Parameters_sc-match>1</Parameters_sc-match>
      <Parameters_sc-mismatch>-2</Parameters_sc-mismatch>
      <Parameters_gap-open>0</Parameters_gap-open>
      <Parameters_gap-extend>0</Parameters_gap-extend>
      <Parameters_filter>L;m;</Parameters_filter>
    </Parameters>
  </BlastOutput_param>
<BlastOutput_iterations>
<Iteration>
  <Iteration_iter-num>1</Iteration_iter-num>
  <Iteration_query-ID>Query_1</Iteration_query-ID>
  <Iteration_query-def>test1</Iteration_query-def>
  <Iteration_query-len>101</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>gnl|BL_ORD_ID|1234</Hit_id>
  <Hit_def>ENA|KT732229|KT732229.1 Measles virus genotype D4 strain MVs/London.GBR/20.12/[D4], complete genome. </Hit_def>
  <Hit_accession>1234</Hit_accession>
  <Hit_len>15684</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>171.012</Hsp_bit-score>
      <Hsp_score>92</Hsp_score>
      <Hsp_evalue>2.48996e-44</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>101</Hsp_query-to>
      <Hsp_hit-from>340</Hsp_hit-from>
      <Hsp_hit-to>440</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>1</Hsp_hit-frame>
      <Hsp_identity>98</Hsp_identity>
      <Hsp_positive>98</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>101</Hsp_align-len>
      <Hsp_qseq>CTTACCTTCGCATCAAGAGGTACCAACATGGAGGATGAGGCGGACCAATACTTTTCACATGATGATCCAATTAGTAGTGATCAATCCAGGTTCGGATGGTT</Hsp_qseq>
      <Hsp_hseq>CTTACCTTCGCATCAAGAGGTACCAACATGGAGGATGAGGCGGACCAATACTTTTCACATGATGATCCAAGTAGTGGTGATCAATCCAGGTCCGGATGGTT</Hsp_hseq>
      <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>2</Hit_num>
  <Hit_id>gnl|BL_ORD_ID|1233</Hit_id>
  <Hit_def>ENA|KT732228|KT732228.1 Measles virus genotype D4 strain MVs/Brighton.GBR/12.12/7/[D4], complete genome. </Hit_def>
  <Hit_accession>1233</Hit_accession>
  <Hit_len>15684</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>171.012</Hsp_bit-score>
      <Hsp_score>92</Hsp_score>
      <Hsp_evalue>2.48996e-44</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>101</Hsp_query-to>
      <Hsp_hit-from>340</Hsp_hit-from>
      <Hsp_hit-to>440</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>1</Hsp_hit-frame>
      <Hsp_identity>98</Hsp_identity>
      <Hsp_positive>98</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>101</Hsp_align-len>
      <Hsp_qseq>CTTACCTTCGCATCAAGAGGTACCAACATGGAGGATGAGGCGGACCAATACTTTTCACATGATGATCCAATTAGTAGTGATCAATCCAGGTTCGGATGGTT</Hsp_qseq>
      <Hsp_hseq>CTTACCTTCGCATCAAGAGGTACCAACATGGAGGATGAGGCGGACCAATACTTTTCACATGATGATCCAAGTAGTGGTGATCAATCCAGGTCCGGATGGTT</Hsp_hseq>
      <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>3</Hit_num>
  <Hit_id>gnl|BL_ORD_ID|1232</Hit_id>
  <Hit_def>ENA|KT732227|KT732227.1 Measles virus genotype D4 strain MVs/Brighton.GBR/49.11/[D4], complete genome. </Hit_def>
  <Hit_accession>1232</Hit_accession>
  <Hit_len>15684</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>171.012</Hsp_bit-score>
      <Hsp_score>92</Hsp_score>
      <Hsp_evalue>2.48996e-44</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>101</Hsp_query-to>
      <Hsp_hit-from>340</Hsp_hit-from>
      <Hsp_hit-to>440</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>1</Hsp_hit-frame>
      <Hsp_identity>98</Hsp_identity>
      <Hsp_positive>98</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>101</Hsp_align-len>
      <Hsp_qseq>CTTACCTTCGCATCAAGAGGTACCAACATGGAGGATGAGGCGGACCAATACTTTTCACATGATGATCCAATTAGTAGTGATCAATCCAGGTTCGGATGGTT</Hsp_qseq>
      <Hsp_hseq>CTTACCTTCGCATCAAGAGGTACCAACATGGAGGATGAGGCGGACCAATACTTTTCACATGATGATCCAAGTAGTGGTGATCAATCCAGGTCCGGATGGTT</Hsp_hseq>
      <Hsp_midline>|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>1239</Statistics_db-num>
      <Statistics_db-len>927775</Statistics_db-len>
      <Statistics_hsp-len>18</Statistics_hsp-len>
      <Statistics_eff-space>75154259</Statistics_eff-space>
      <Statistics_kappa>0.46</Statistics_kappa>
      <Statistics_lambda>1.28</Statistics_lambda>
      <Statistics_entropy>0.85</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
<Iteration>
  <Iteration_iter-num>2</Iteration_iter-num>
  <Iteration_query-ID>Query_2</Iteration_query-ID>
  <Iteration_query-def>test2</Iteration_query-def>
  <Iteration_query-len>101</Iteration_query-len>
<Iteration_hits>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>1239</Statistics_db-num>
      <Statistics_db-len>927775</Statistics_db-len>
      <Statistics_hsp-len>18</Statistics_hsp-len>
      <Statistics_eff-space>75154259</Statistics_eff-space>
      <Statistics_kappa>0.46</Statistics_kappa>
      <Statistics_lambda>1.28</Statistics_lambda>
      <Statistics_entropy>0.85</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
  <Iteration_message>No hits found</Iteration_message>
</Iteration>
<Iteration>
  <Iteration_iter-num>3</Iteration_iter-num>
  <Iteration_query-ID>Query_3</Iteration_query-ID>
  <Iteration_query-def>test3</Iteration_query-def>
  <Iteration_query-len>101</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>gnl|BL_ORD_ID|1234</Hit_id>
  <Hit_def>ENA|KT732229|KT732229.1 Measles virus genotype D4 strain MVs/London.GBR/20.12/[D4], complete genome. </Hit_def>
  <Hit_accession>1234</Hit_accession>
  <Hit_len>15684</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>182.092</Hsp_bit-score>
      <Hsp_score>98</Hsp_score>
      <Hsp_evalue>1.1503e-47</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>101</Hsp_query-to>
      <Hsp_hit-from>10685</Hsp_hit-from>
      <Hsp_hit-to>10585</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>-1</Hsp_hit-frame>
      <Hsp_identity>100</Hsp_identity>
      <Hsp_positive>100</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>101</Hsp_align-len>
      <Hsp_qseq>ACAACATACATTATCACATCATATGGGTCAAAGCTCGAATCATTAAGGAAAACATCTACAAGCCTCCGTGACCCGGTTCCCTTGGGAGGGTCGTAACGCAG</Hsp_qseq>
      <Hsp_hseq>ACAACATACATTATCATATCATATGGGTCAAAGCTCGAATCATTAAGGAAAACATCTACAAGCCTCCGTGACCCGGTTCCCTTGGGAGGGTCGTAACGCAG</Hsp_hseq>
      <Hsp_midline>|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>2</Hit_num>
  <Hit_id>gnl|BL_ORD_ID|1233</Hit_id>
  <Hit_def>ENA|KT732228|KT732228.1 Measles virus genotype D4 strain MVs/Brighton.GBR/12.12/7/[D4], complete genome. </Hit_def>
  <Hit_accession>1233</Hit_accession>
  <Hit_len>15684</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>182.092</Hsp_bit-score>
      <Hsp_score>98</Hsp_score>
      <Hsp_evalue>1.1503e-47</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>101</Hsp_query-to>
      <Hsp_hit-from>10685</Hsp_hit-from>
      <Hsp_hit-to>10585</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>-1</Hsp_hit-frame>
      <Hsp_identity>100</Hsp_identity>
      <Hsp_positive>100</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>101</Hsp_align-len>
      <Hsp_qseq>ACAACATACATTATCACATCATATGGGTCAAAGCTCGAATCATTAAGGAAAACATCTACAAGCCTCCGTGACCCGGTTCCCTTGGGAGGGTCGTAACGCAG</Hsp_qseq>
      <Hsp_hseq>ACAACATACATTATCATATCATATGGGTCAAAGCTCGAATCATTAAGGAAAACATCTACAAGCCTCCGTGACCCGGTTCCCTTGGGAGGGTCGTAACGCAG</Hsp_hseq>
      <Hsp_midline>|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>3</Hit_num>
  <Hit_id>gnl|BL_ORD_ID|1232</Hit_id>
  <Hit_def>ENA|KT732227|KT732227.1 Measles virus genotype D4 strain MVs/Brighton.GBR/49.11/[D4], complete genome. </Hit_def>
  <Hit_accession>1232</Hit_accession>
  <Hit_len>15684</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>182.092</Hsp_bit-score>
      <Hsp_score>98</Hsp_score>
      <Hsp_evalue>1.1503e-47</Hsp_evalue>
      <Hsp_query-from>1</Hsp_query-from>
      <Hsp_query-to>101</Hsp_query-to>
      <Hsp_hit-from>10685</Hsp_hit-from>
      <Hsp_hit-to>10585</Hsp_hit-to>
      <Hsp_query-frame>1</Hsp_query-frame>
      <Hsp_hit-frame>-1</Hsp_hit-frame>
      <Hsp_identity>100</Hsp_identity>
      <Hsp_positive>100</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>101</Hsp_align-len>
      <Hsp_qseq>ACAACATACATTATCACATCATATGGGTCAAAGCTCGAATCATTAAGGAAAACATCTACAAGCCTCCGTGACCCGGTTCCCTTGGGAGGGTCGTAACGCAG</Hsp_qseq>
      <Hsp_hseq>ACAACATACATTATCATATCATATGGGTCAAAGCTCGAATCATTAAGGAAAACATCTACAAGCCTCCGTGACCCGGTTCCCTTGGGAGGGTCGTAACGCAG</Hsp_hseq>
      <Hsp_midline>|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>1239</Statistics_db-num>
      <Statistics_db-len>927775</Statistics_db-len>
      <Statistics_hsp-len>18</Statistics_hsp-len>
      <Statistics_eff-space>75154259</Statistics_eff-space>
      <Statistics_kappa>0.46</Statistics_kappa>
      <Statistics_lambda>1.28</Statistics_lambda>
      <Statistics_entropy>0.85</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
</BlastOutput_iterations>
</BlastOutput>

