# coding: utf-8 -*-
"""snakemakerule

Defines a docutils directive for inserting simple docstring extracting from 
a snakemake rule (from sequana project).

::

    .. snakemakerule: dag

The name must be a valid sequana rule in the rules directory accesible via the
:class:`sequana.snaketools.Module` class

"""
import re
from docutils.parsers.rst import  directives
from docutils import nodes
from docutils.nodes import Body, Element


def get_rule_doc(name):
    """Decode and return the docstring(s) of a sequana/snakemake rule."""
    try:
        from sequana import Module
        rule = Module(name)
        filename = rule.path + "/%s.rules" %  name
        data = open(filename, "r").read()
    except ValueError:
        # a local file ?
        data = open(name, "r").read()

    # Try to identify the rule and therefore possible docstring
    # It may be a standard rule or a dynamic rule !
    # standard one
    rulename_tag = "rule %s" % name
    if rulename_tag in data:
        data = data.split(rulename_tag, 1)[1]
    else:
        return "no docstring found for %s " % name

    # Find first """ or ''' after the rule definition
    single = data.find("'''")
    double = data.find('"""')
    if single > 0 and double > 0:
        if single > double:
            quotes = '"""'
        else:
            quotes = "'''"
    elif single > 0:
        quotes = "'''"
    elif double > 0:
        quotes = '"""'
    else:
        return "no docstring found for %s " % name

    start = data.find(quotes)
    end = data[start+3:].find(quotes) + start+3 

    if end == -1 or end < start:
        return "no end of docstring found for %s " % name

    docstring = data[start+3:end]
    return docstring


def get_rule_doc_snakemake(name):
    """Decode and return lines of the docstring(s) for the object."""
    from sequana import Module
    import snakemake
    rule = Module(name)
    wf = snakemake.Workflow(rule.path + "/%s.rules" %  name)
    wf.include(rule.path + "/%s.rules" % name)
    docstring = list(wf.rules)[0].docstring
    return docstring


class snakemake_base(Body, Element):
    def dont_traverse(self, *args, **kwargs):
        return []


class snakemake_rule(snakemake_base):
    pass


def run(content, node_class, state, content_offset):
    node = node_class("")  # shall we add something here ?
    node.rule_docstring = get_rule_doc(content[0])
    state.nested_parse(content, content_offset, node)
    return [node]


def snakemake_rule_directive(name, arguments, options, content, lineno,
                         content_offset, block_text, state, state_machine):
    return run(content, snakemake_rule, state, content_offset)


def setup(app):
    #app.add_autodocumenter(RuleDocumenter)
    app.add_directive('snakemakerule', snakemake_rule_directive, True, (0,0,0))

    # Add visit/depart methods to HTML-Translator:
    def visit_perform(self, node):
        # Ideally, we should use sphinx but this is a simple temporary solution
        from docutils import core
        from docutils.writers.html4css1 import Writer
        w = Writer()
        try:
            res = core.publish_parts(node.rule_docstring, writer=w)['html_body']
            self.body.append('<div class="snakemake">' + res + '</div>' )
            node.children = []
        except Exception as err:
            print(err)
            self.body.append('<div class="snakemake"> no docstring </div>' )


    def depart_perform(self, node):
        node.children = []

    def visit_ignore(self, node):
        node.children = []

    def depart_ignore(self, node):
        node.children = []

    app.add_node(snakemake_rule,
                 html=(visit_perform, depart_perform),
                 latex=(visit_ignore, depart_ignore))







