MANIFEST.in
README.rst
requirements.txt
setup.cfg
setup.py
versioneer.py
scanpy/__init__.py
scanpy/_version.py
scanpy/exporting.py
scanpy/logging.py
scanpy/readwrite.py
scanpy/settings.py
scanpy/utils.py
scanpy.egg-info/PKG-INFO
scanpy.egg-info/SOURCES.txt
scanpy.egg-info/dependency_links.txt
scanpy.egg-info/not-zip-safe
scanpy.egg-info/requires.txt
scanpy.egg-info/top_level.txt
scanpy/api/__init__.py
scanpy/api/datasets.py
scanpy/api/export_to.py
scanpy/api/logging.py
scanpy/api/pl.py
scanpy/api/pp.py
scanpy/api/queries.py
scanpy/api/tl.py
scanpy/datasets/__init__.py
scanpy/datasets/api_without_datasets.py
scanpy/datasets/krumsiek11.txt
scanpy/datasets/toggleswitch.txt
scanpy/neighbors/__init__.py
scanpy/neighbors/umap/__init__.py
scanpy/neighbors/umap/distances.py
scanpy/neighbors/umap/sparse.py
scanpy/neighbors/umap/umap_.py
scanpy/neighbors/umap/utils.py
scanpy/plotting/__init__.py
scanpy/plotting/anndata.py
scanpy/plotting/docs.py
scanpy/plotting/palettes.py
scanpy/plotting/preprocessing.py
scanpy/plotting/qc.py
scanpy/plotting/rcmod.py
scanpy/plotting/top_genes_visual.py
scanpy/plotting/utils.py
scanpy/plotting/tools/__init__.py
scanpy/plotting/tools/paga.py
scanpy/plotting/tools/scatterplots.py
scanpy/preprocessing/__init__.py
scanpy/preprocessing/bbknn.py
scanpy/preprocessing/dca.py
scanpy/preprocessing/distributed.py
scanpy/preprocessing/highly_variable_genes.py
scanpy/preprocessing/magic.py
scanpy/preprocessing/mnn_correct.py
scanpy/preprocessing/qc.py
scanpy/preprocessing/recipes.py
scanpy/preprocessing/simple.py
scanpy/preprocessing/utils.py
scanpy/preprocessing/_deprecated/__init__.py
scanpy/preprocessing/_deprecated/highly_variable_genes.py
scanpy/queries/__init__.py
scanpy/rtools/__init__.py
scanpy/rtools/mnn_correct.py
scanpy/sim_models/__init__.py
scanpy/sim_models/krumsiek11.txt
scanpy/sim_models/krumsiek11_params.txt
scanpy/sim_models/toggleswitch.txt
scanpy/sim_models/toggleswitch_params.txt
scanpy/tools/__init__.py
scanpy/tools/_tsne_fix.py
scanpy/tools/_utils.py
scanpy/tools/diffmap.py
scanpy/tools/dpt.py
scanpy/tools/draw_graph.py
scanpy/tools/leiden.py
scanpy/tools/louvain.py
scanpy/tools/paga.py
scanpy/tools/pca.py
scanpy/tools/phate.py
scanpy/tools/pypairs.py
scanpy/tools/rank_genes_groups.py
scanpy/tools/rna_velocity.py
scanpy/tools/score_genes.py
scanpy/tools/sim.py
scanpy/tools/top_genes.py
scanpy/tools/tsne.py
scanpy/tools/umap.py