# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /Users/distiller/project/recipes/salmon, last modified Fri Jul 23 11:48:36 2021
# ------------------------------------------------

package:
  name: salmon
  version: 1.5.2
source:
  sha256: 5a0b8db4a9bebaf5d7d03d8804e7f0c7dce3f340d1c998cea7565bb167d3481c
  url: https://github.com/COMBINE-lab/salmon/archive/v1.5.2.tar.gz
build:
  number: '0'
  string: hbc7aaa1_0
requirements:
  build:
    - autoconf 2.69 pl5320hbcb3906_10
    - bzip2 1.0.8 h0d85af4_4
    - c-ares 1.17.1 h0d85af4_1
    - ca-certificates 2021.5.30 h033912b_0
    - cctools_osx-64 949.0.1 h6407bdd_22
    - clang 11.1.0 h694c41f_1
    - clang-11 11.1.0 default_he082bbe_1
    - clang_osx-64 11.1.0 hb91bd55_2
    - clangxx 11.1.0 default_he082bbe_1
    - clangxx_osx-64 11.1.0 h7e1b574_2
    - cmake 3.21.0 hdbd2f3e_0
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - expat 2.4.1 he49afe7_0
    - krb5 1.19.1 hcfbf3a7_0
    - ld64_osx-64 530 he8994da_21
    - ldid 2.1.2 h7660a38_2
    - libclang-cpp11.1 11.1.0 default_he082bbe_1
    - libcurl 7.77.0 hf45b732_0
    - libcxx 12.0.1 habf9029_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 haf1e3a3_1
    - libllvm11 11.1.0 hd011deb_2
    - libllvm12 12.0.1 hd011deb_0
    - libnghttp2 1.43.0 h07e645a_0
    - libssh2 1.9.0 h52ee1ee_6
    - libuv 1.42.0 h0d85af4_0
    - llvm-tools 11.1.0 hd011deb_2
    - lz4-c 1.9.3 h046ec9c_0
    - m4 1.4.18 haf1e3a3_1001
    - make 4.3 h22f3db7_1
    - ncurses 6.2 h2e338ed_4
    - openssl 1.1.1k h0d85af4_0
    - perl 5.32.1 0_h0d85af4_perl5
    - rhash 1.4.1 h35c211d_0
    - tapi 1100.0.11 h9ce4665_0
    - tk 8.6.10 h0419947_1
    - xz 5.2.5 haf1e3a3_1
    - zlib 1.2.11 h7795811_1010
    - zstd 1.5.0 h582d3a0_0
  host:
    - boost-cpp 1.74.0 hff03dee_4
    - bzip2 1.0.8 h0d85af4_4
    - icu 68.1 h74dc148_0
    - jemalloc 5.2.1 h046ec9c_5
    - libcxx 12.0.1 habf9029_0
    - lz4-c 1.9.3 h046ec9c_0
    - tbb 2020.2 h940c156_4
    - tbb-devel 2020.2 h940c156_4
    - unzip 6.0 hbcf498f_2
    - xz 5.2.5 haf1e3a3_1
    - zlib 1.2.11 h7795811_1010
    - zstd 1.5.0 h582d3a0_0
  run:
    - boost-cpp >=1.74.0,<1.74.1.0a0
    - bzip2 >=1.0.8,<2.0a0
    - icu >=68.1,<69.0a0
    - jemalloc >=5.2.1
    - libcxx >=11.1.0
    - tbb >=2020.2,<2021.0.0a0
    - zlib >=1.2.11,<1.3.0a0
test:
  commands:
    - salmon --help
  source_files:
    - sample_data.tgz
about:
  home: https://github.com/COMBINE-lab/salmon
  license: GPLv3
  license_file: LICENSE
  summary: Highly-accurate & wicked fast transcript-level quantification from RNA-seq
    reads using selective alignment
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:salmon
    - doi:10.1038/nmeth.4197
    - usegalaxy-eu:alevin
    - usegalaxy-eu:salmon
  recipe-maintainers:
    - k3yavi
    - rob-p
