#ifndef __VIENNA_RNA_PACKAGE_SNPR_H__
#define __VIENNA_RNA_PACKAGE_SNPR_H__

#include "data_structures.h"

PUBLIC void processSNP(char *snpFileName, 
		       char *header, 
		       char *sequence, 
		       int winsize, 
		       int pairdist, 
		       int regionX, 
		       int regionY,
		       int winsizeFold,
                       int minLen,
                       float cutoff,
                       float iop,
                       int Prog,
                       int edist,
                       int snpflag,
		       int winsizeExt,
		       char *path,
		       float pvalue1,
		       float pvalue2);

#endif
