CHANGESLOG.md
LICENSE
MANIFEST.in
README.md
choose_reference_with_ANI.md
especiallyquickstart.md
quickstart.md
requirements.txt
setup.cfg
setup.py
riboSeed/__init__.py
riboSeed/_version.py
riboSeed/classes.py
riboSeed/make_riboSeed_config.py
riboSeed/ribo.py
riboSeed/riboScan.py
riboSeed/riboScore.py
riboSeed/riboSeed.py
riboSeed/riboSelect.py
riboSeed/riboSim.py
riboSeed/riboSketch.py
riboSeed/riboSnag.py
riboSeed/riboSpec.py
riboSeed/riboStack.py
riboSeed/riboStructure.py
riboSeed/riboSwap.py
riboSeed/run_riboSeed.py
riboSeed/shared_methods.py
riboSeed.egg-info/PKG-INFO
riboSeed.egg-info/SOURCES.txt
riboSeed.egg-info/dependency_links.txt
riboSeed.egg-info/entry_points.txt
riboSeed.egg-info/requires.txt
riboSeed.egg-info/top_level.txt
riboSeed/integration_data/NC_000913.3.fasta
riboSeed/integration_data/__init__.py
riboSeed/integration_data/concatenated_seq.fasta
riboSeed/integration_data/test_reads1.fq
riboSeed/integration_data/test_reads2.fq
sample_data/BA000007.2.fasta
sample_data/NC_011751.1.fasta
sample_data/NC_011751.1.gb
sample_data/all_complete_strains.csv
scripts/runme.py
scripts/seedRand.py
tests/__init__.py
tests/context.py
tests/cprofile.py
tests/test_Exes.py
tests/test_NgsLib.py
tests/test_SeedGenome.py
tests/test_conda.py
tests/test_ribo.py
tests/test_riboScan.py
tests/test_riboScore.py
tests/test_riboSeed.py
tests/test_riboSelect.py
tests/test_riboSim.py
tests/test_riboSketch.py
tests/test_riboSnag.py
tests/test_riboSpec.py
tests/test_riboStack.py
tests/test_riboSwap.py
tests/test_run_riboSeed.py
tests/test_shared_methods.py