AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.cfg
setup.py
docs/Makefile
docs/api-usage.rst
docs/authors.rst
docs/cmd-manual.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/modules.rst
docs/riboraptor.rst
docs/scores.rst
docs/images/SRR5227306.framewise.png
docs/images/SRR5227306.metagene.png
docs/images/SRR5227306.png
docs/images/SRR5227306_metagene.png
docs/images/SRR5227306_metagene_ascii.png
docs/images/SRR5227306_read_length_dist_ascii.png
docs/images/SRR5227310.framewise.png
docs/images/SRR5227310.metagene.png
docs/images/SRR5227310.png
docs/images/SRR5227310_metagene.png
docs/images/SRR5227310_metagene_ascii.png
docs/images/SRR5227310_read_length_dist_ascii.png
docs/images/fragment_length_distribution_ideal.png
docs/images/fragment_length_distribution_rna.png
docs/images/gene_coverage_ENSG00000080824.png
riboraptor/__init__.py
riboraptor/cli.py
riboraptor/coherence.py
riboraptor/count.py
riboraptor/dtw.py
riboraptor/fasta.py
riboraptor/genome.py
riboraptor/helpers.py
riboraptor/normalization.py
riboraptor/plotting.py
riboraptor/statistics.py
riboraptor/utils.py
riboraptor/wig.py
riboraptor.egg-info/PKG-INFO
riboraptor.egg-info/SOURCES.txt
riboraptor.egg-info/dependency_links.txt
riboraptor.egg-info/entry_points.txt
riboraptor.egg-info/not-zip-safe
riboraptor.egg-info/requires.txt
riboraptor.egg-info/top_level.txt
riboraptor/annotation/hg38/cds.bed.gz
riboraptor/annotation/hg38/genes.bed.gz
riboraptor/annotation/hg38/hg38.chrom.sizes
riboraptor/annotation/hg38/start_codon.bed.gz
riboraptor/annotation/hg38/stop_codon.bed.gz
riboraptor/annotation/hg38/utr3.bed.gz
riboraptor/annotation/hg38/utr5.bed.gz
riboraptor/annotation/mm10/cds.bed.gz
riboraptor/annotation/mm10/genes.bed.gz
riboraptor/annotation/mm10/mm10.chrom.sizes
riboraptor/annotation/mm10/start_codon.bed.gz
riboraptor/annotation/mm10/stop_codon.bed.gz
riboraptor/annotation/mm10/utr3.bed.gz
riboraptor/annotation/mm10/utr5.bed.gz
riboraptor/annotation/notebooks/gencode-regions-human.ipynb
riboraptor/annotation/notebooks/gencode-regions-mouse.ipynb
tests/__init__.py
tests/commands.txt
tests/test_riboraptor.py
tests/data/SRX2536403_subsampled.unique.bam
tests/data/SRX2536403_subsampled.unique.bam.bai
tests/data/SRX2536403_subsampled.unique.bedGraph
tests/data/SRX2536403_subsampled.unique.bigWig
tests/data/SRX2536403_subsampled.unique.fragment_lengths.png
tests/data/SRX2536403_subsampled.unique.gene_coverage_CDS.tsv
tests/data/SRX2536403_subsampled.unique.gene_coverage_UTR3.tsv
tests/data/SRX2536403_subsampled.unique.gene_coverage_UTR5.tsv
tests/data/SRX2536403_subsampled.unique.metagene.png
tests/data/SRX2536403_subsampled.unique.metagene_counts.tsv
tests/data/SRX2536403_subsampled.unique.read_length_dist.tsv