# Generated by roxygen2: do not edit by hand

export(Vision)
export(addSignatures)
export(addTSNE)
export(addUMAP)
export(analyzeLocalCorrelations)
export(annotateLatentComponents)
export(applyMicroClustering)
export(calcSignatureScores)
export(clusterSigScores)
export(computeLatentSpace)
export(convertGeneIds)
export(createGeneSignature)
export(poolMatrixCols)
export(poolMatrixRows)
export(poolMetaData)
export(read_10x)
export(read_10x_h5)
export(read_10x_h5_v2)
export(read_10x_h5_v3)
exportMethods(Vision)
exportMethods(addProjection)
exportMethods(analyze)
exportMethods(getLatentSpace)
exportMethods(getLatentTrajectory)
exportMethods(getMetaAutocorrelation)
exportMethods(getMetaDifferential)
exportMethods(getProjections)
exportMethods(getSelections)
exportMethods(getSignatureAutocorrelation)
exportMethods(getSignatureDifferential)
exportMethods(getSignatureScores)
exportMethods(saveAndViewResults)
exportMethods(viewResults)
import(Matrix)
import(Rcpp)
import(loe)
import(logging)
import(methods)
importFrom(Matrix,Diagonal)
importFrom(Matrix,Matrix)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,readMM)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,summary)
importFrom(Matrix,tcrossprod)
importFrom(RANN,nn2)
importFrom(Rcpp,evalCpp)
importFrom(Rcpp,sourceCpp)
importFrom(Rtsne,Rtsne)
importFrom(fastICA,fastICA)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,embed_adjacency_matrix)
importFrom(igraph,ends)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,layout_as_tree)
importFrom(igraph,layout_with_dh)
importFrom(igraph,layout_with_fr)
importFrom(igraph,layout_with_mds)
importFrom(irlba,irlba)
importFrom(jsonlite,fromJSON)
importFrom(jsonlite,toJSON)
importFrom(matrixStats,colCounts)
importFrom(matrixStats,colMaxs)
importFrom(matrixStats,colMeans2)
importFrom(matrixStats,colMedians)
importFrom(matrixStats,colRanks)
importFrom(matrixStats,colSds)
importFrom(matrixStats,colVars)
importFrom(matrixStats,logSumExp)
importFrom(matrixStats,rowMaxs)
importFrom(matrixStats,rowMeans2)
importFrom(matrixStats,rowSds)
importFrom(matrixStats,rowVars)
importFrom(mclust,Mclust)
importFrom(mclust,mclustBIC)
importFrom(mime,guess_type)
importFrom(parallel,mclapply)
importFrom(pbmcapply,pbmclapply)
importFrom(plumber,forward)
importFrom(plumber,plumber)
importFrom(rsvd,rsvd)
importFrom(stats,chisq.test)
importFrom(stats,cor.test)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,pnorm)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(utils,URLdecode)
importFrom(utils,browseURL)
importFrom(utils,read.table)
importFrom(utils,stack)
importFrom(vegan,isomap)
importFrom(wordspace,dist.matrix)
useDynLib(VISION)
