AddDatatoplot_clustering	AddDatatoplot_clustering
AddDatatoplot_clustering,redeemR-method	AddDatatoplot_clustering-redeemR-method
AddDist	AddDist
AddDist,redeemR-method	AddDist-redeemR-method
AddDist_legacy	AddDist_legacy
AddDist_legacy,mitoTracing-method	AddDist_legacy-mitoTracing-method
AddHemSignature	AddHemSignature
AddTree	AddTree
AddTree,redeemR-method	AddTree-redeemR-method
Add_AssignVariant	Add_AssignVariant
Add_AssignVariant,redeemR-method	Add_AssignVariant-redeemR-method
Add_DepthMatrix	Add_DepthMatrix
Add_DepthMatrix,redeemR-method	Add_DepthMatrix-redeemR-method
add_derived_profile_info	add_derived_profile_info
Add_tree_cut	Add_tree_cut
Add_tree_cut,redeemR-method	Add_tree_cut-redeemR-method
ATAC_Wrapper	ATAC_Wrapper
BinaryDist	BinaryDist
Clone_FinderMarker	Clone_FinderMarker
ComputeRejectRate	ComputeRejectRate
convert_mitotracing_redeemR	convert_mitotracing_redeemR
CountVperCell	CountVperCell
Create_mitoTracing	Create_mitoTracing
Create_redeemR	Create_redeemR
CV	CV
CW_mgatk.read	CW_mgatk.read
Datatoplots	Datatoplots-class
Datatoplots-class	Datatoplots-class
DE.gettripple	DE.gettripple
DepthSummary	DepthSummary
df2ProfileMtx	df2ProfileMtx
DistObjects	DistObjects-class
DistObjects-class	DistObjects-class
DoDE	DoDE
FromDist2Graph	FromDist2Graph
GEM_Wrapper	GEM_Wrapper
get_ancestral_nodes	get_ancestral_nodes
Get_Clonal_Variants	Get_Clonal_Variants
GTSummary	GTSummary
LineageBiasPlot	LineageBiasPlot
MakeAllNodes	MakeAllNodes
MakeDF4Regress	MakeDF4Regress
MakeNN	MakeNN
Make_AnnTable	Make_AnnTable
Make_Cells4Nodes	Make_Cells4Nodes
Make_matrix	Make_matrix
Make_matrix,redeemR-method	Make_matrix-redeemR-method
Make_tree	Make_tree
Make_tree,redeemR-method	Make_tree-redeemR-method
Make_tree_legacy	Make_tree_legacy
Make_tree_legacy,mitoTracing-method	Make_tree_legacy-mitoTracing-method
MergeMtx	MergeMtx
mitoTracing	mitoTracing-class
mitoTracing-class	mitoTracing-class
Motifenrich.binom	Motifenrich.binom
Multi_Wrapper	Multi_Wrapper
MutationProfile.bulk	MutationProfile.bulk
NN2M	NN2M
plot_depth	plot_depth
plot_depth_legacy	plot_depth_legacy
plot_npSummary	plot_npSummary
plot_variant	plot_variant
plot_variant_legacy	plot_variant_legacy
ProgenyMapping	ProgenyMapping
ProgenyMapping_np	ProgenyMapping_np
quick_w_cosine	quick_w_cosine
quick_w_jaccard	quick_w_jaccard
Reclustering	Reclustering
Reclustering_hm	Reclustering_hm
reconstruct_genotype_summary	reconstruct_genotype_summary
redeemR	redeemR-class
redeemR-class	redeemR-class
redeemR.read	redeemR.read
Runplot_scale_2	Runplot_scale_2
Runplot_scale_3	Runplot_scale_3
Run_Lin_regression	Run_Lin_regression
Run_Lin_regression_poi	Run_Lin_regression_poi
SeuratLSIClustering	SeuratLSIClustering
SeuratLSIClustering,redeemR-method	SeuratLSIClustering-redeemR-method
show,redeemR-method	show-redeemR-method
Show_Consensus	Show_Consensus
split_profile	split_profile
str2vector	str2vector
Subset_redeemR	Subset_redeemR
Tomerge_v2	Tomerge_v2
Translate_RNA2ATAC	Translate_RNA2ATAC
Translate_simple_ATAC2RNA	Translate_simple_ATAC2RNA
Translate_simple_RNA2ATAC	Translate_simple_RNA2ATAC
TREE	TREE-class
TREE-class	TREE-class
Vfilter_v3	Vfilter_v3
Vfilter_v4	Vfilter_v4
