Package: redeemR
Title: R package for Regulatory multi-omics with Deep Mitochondrial
        mutation profiling
Version: 1.0
Authors@R: 
    person("Chen", "Weng", , "cweng@broadinstitute.org", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-0801-7037"))
Description: Introduce a new approach for single-cell Regulatory multi-omics (transcriptomics and chromatin accessibility) with Deep Mitochondrial mutation profiling (~10-fold increase in detection rate), or ReDeeM. redeemR is the R package that facilitates mutation refining, lineage tracing, as well multiomics integration analysis. 
License: MIT LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: ape, doMC, doParallel, dplyr, foreach, ggExtra, ggnewscale,
        ggplot2, ggtree, ggtreeExtra, gridExtra, igraph, Matrix,
        phangorn, phytools, pryr, qvalue, RColorBrewer, reshape2,
        SCAVENGE (>= 1.0.1), Seurat, stats, tibble, tidytree, treeio
Remotes: github::sankaranlab/SCAVENGE
Author: Chen Weng [aut, cre] (<https://orcid.org/0000-0003-0801-7037>)
Maintainer: Chen Weng <cweng@broadinstitute.org>
Built: R 4.3.3; ; 2024-07-22 21:51:07 UTC; unix
