build.plotter	build.plotter
build.plotter.advanced	build.plotter
build.plotter.basic	build.plotter
build.plotter.colorByGroup	build.plotter
build.plotter.colorByLane	build.plotter
build.plotter.colorBySample	build.plotter
build.plotter.colorByX	build.plotter
build.plotter.highlightSample	build.plotter
build.plotter.highlightSample.colorByLane	build.plotter
completeAndCheckDecoder	read.qc.results.data
get.size.factors	get.summary.table
get.summary.table	get.summary.table
makeMultiPlot	makeMultiPlot
makeMultiPlot.all	makeMultiPlot.all
makeMultiPlot.basic	makeMultiPlot
makeMultiPlot.colorByGroup	makeMultiPlot
makeMultiPlot.colorByLane	makeMultiPlot
makeMultiPlot.colorBySample	makeMultiPlot
makeMultiPlot.highlightSample	makeMultiPlot
makeMultiPlot.highlightSample.all	makeMultiPlot.highlightSample.all
makeMultiPlot.highlightSample.colorByLane	makeMultiPlot
makeMultiPlot.highlightSample.colorByLane.all	makeMultiPlot.highlightSample.all
makeMultiPlot.withPlotter	makeMultiPlot
makePlot.biotype.rates	makePlot.biotype.rates
makePlot.chrom.type.rates	makePlot.chrom.type.rates
makePlot.cigarLength.distribution	makePlot.cigarLength.distribution
makePlot.cigarOp.byCycle	makePlot.cigarOp.byCycle
makePlot.clipping	makePlot.clipping
makePlot.dropped.rates	makePlot.dropped.rates
makePlot.gc	makePlot.gc
makePlot.gene.assignment.rates	makePlot.gene.assignment.rates
makePlot.gene.cdf	makePlot.gene.cdf
makePlot.genebody	makePlot.genebody.coverage
makePlot.genebody.coverage	makePlot.genebody.coverage
makePlot.genebody.coverage.lowExpress	makePlot.genebody.coverage
makePlot.genebody.coverage.UMQuartile	makePlot.genebody.coverage
makePlot.insert.size	makePlot.insert.size
makePlot.legend.box	makePlot.legend.box
makePlot.legend.over	makePlot.legend.box
makePlot.mapping.rates	makePlot.mapping.rates
makePlot.minus.clipping.NVC	makePlot.raw.NVC
makePlot.missingness.rate	makePlot.missingness.rate
makePlot.norm.factors	makePlot.norm.factors
makePlot.norm.factors.vs.TC	makePlot.norm.factors
makePlot.NVC	makePlot.raw.NVC
makePlot.NVC.clip.matchByClipPosition	makePlot.NVC.clip.matchByClipPosition
makePlot.NVC.lead.clip	makePlot.NVC.lead.clip
makePlot.NVC.lead.clip.matchByClipPosition	makePlot.NVC.clip.matchByClipPosition
makePlot.NVC.tail.clip	makePlot.NVC.lead.clip
makePlot.NVC.tail.clip.matchByClipPosition	makePlot.NVC.clip.matchByClipPosition
makePlot.onTarget.counts	makePlot.onTarget
makePlot.onTarget.rates	makePlot.onTarget
makePlot.overlap	makePlot.overlap
makePlot.overlap.coverage	makePlot.overlap
makePlot.overlapMismatch.byBase	makePlot.overlap
makePlot.overlapMismatch.byBase.atScore	makePlot.overlap
makePlot.overlapMismatch.byCycle	makePlot.overlap
makePlot.overlapMismatch.byQual.min	makePlot.overlap
makePlot.overlapMismatch.byQual.read	makePlot.overlap
makePlot.overlapMismatch.perRead	makePlot.overlap
makePlot.overlapMismatch.size	makePlot.overlap
makePlot.qual.pair	makePlot.qual.pair
makePlot.raw.NVC	makePlot.raw.NVC
makePlot.readLengthDist	makePlot.readLengthDist
makePlot.reference	makePlot.reference
makePlot.referenceMismatch	makePlot.reference
makePlot.referenceMismatch.byBase	makePlot.reference
makePlot.referenceMismatch.byBase.atScore	makePlot.reference
makePlot.referenceMismatch.byCycle	makePlot.reference
makePlot.referenceMismatch.byScore	makePlot.reference
makePlot.referenceMismatch.perRead	makePlot.reference
makePlot.runTimePerformance	makePlot.runTimePerformance
makePlot.splice.junction.event	makePlot.splice.junction.event
makePlot.splice.junction.event.counts	makePlot.splice.junction.event
makePlot.splice.junction.event.proportions	makePlot.splice.junction.event
makePlot.splice.junction.event.proportionsByType	makePlot.splice.junction.event
makePlot.splice.junction.event.ratesPerRead	makePlot.splice.junction.event
makePlot.splice.junction.loci.counts	makePlot.splice.junction.loci.counts
makePlot.strandedness.test	makePlot.strandedness.test
makePlot.targetDistribution	makePlot.onTarget
plotter	build.plotter
QoRTs.default.plotting.params	build.plotter
read.qc.results.data	read.qc.results.data
