# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/r-pcalg, last modified Mon May 29 08:51:13 2023
# ------------------------------------------------

package:
  name: r-pcalg
  version: '2.6_12'
source:
  sha256: 4c18c96dbe38d672666c11bd0dc9d4e93fa29497a1c4b905440f52593c10674a
  url:
    - https://cran.r-project.org/src/contrib/Archive/pcalg/pcalg_2.6-12.tar.gz
    - https://cran.r-project.org/src/contrib/pcalg_2.6-12.tar.gz
build:
  number: '5'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r42h71b3455_5
requirements:
  build:
    - ca-certificates 2023.5.7 h8857fd0_0
    - cctools_osx-64 973.0.1 h48a5a9d_13
    - clang 15.0.7 h694c41f_2
    - clang-15 15.0.7 default_hdb78580_2
    - clang_osx-64 15.0.7 h03d6864_3
    - clangxx 15.0.7 default_hdb78580_2
    - clangxx_osx-64 15.0.7 h2133e9c_3
    - compiler-rt 15.0.7 he1888fc_1
    - compiler-rt_osx-64 15.0.7 he1888fc_1
    - icu 72.1 h7336db1_0
    - ld64_osx-64 609 h8ce0179_13
    - libclang-cpp15 15.0.7 default_hdb78580_2
    - libcxx 16.0.4 hd57cbcb_0
    - libiconv 1.17 hac89ed1_0
    - libllvm15 15.0.7 he4b1e75_2
    - libxml2 2.11.4 hd95e348_0
    - libzlib 1.2.13 hfd90126_4
    - llvm-tools 15.0.7 he4b1e75_2
    - make 4.3 h22f3db7_1
    - openssl 3.1.0 h8a1eda9_3
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - xz 5.2.6 h775f41a_0
    - zstd 1.5.2 hbc0c0cd_6
  host:
    - _r-mutex 1.0.1 anacondar_1
    - bioconductor-biocgenerics 0.44.0 r42hdfd78af_0
    - bioconductor-graph 1.76.0 r42h4c50009_1
    - bioconductor-rbgl 1.74.0 r42hc0ef7c4_1
    - bwidget 1.9.14 h694c41f_1
    - bzip2 1.0.8 h0d85af4_4
    - c-ares 1.19.1 h0dc2134_0
    - ca-certificates 2023.5.7 h8857fd0_0
    - cairo 1.16.0 h09dd18c_1016
    - cctools_osx-64 973.0.1 h5676edf_13
    - clang 16.0.4 hc177806_0
    - clang-16 16.0.4 default_h762fdd7_0
    - clang_osx-64 16.0.4 h51e6054_0
    - clangxx 16.0.4 default_h762fdd7_0
    - clangxx_osx-64 16.0.4 hcedd546_0
    - compiler-rt 16.0.4 he1888fc_0
    - compiler-rt_osx-64 16.0.4 he1888fc_0
    - curl 8.1.1 hbee3ae8_0
    - expat 2.5.0 hf0c8a7f_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 h5bb23bf_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 h3f81eb7_1
    - fribidi 1.0.10 hbcb3906_0
    - gettext 0.21.1 h8a4c099_0
    - gfortran_impl_osx-64 12.2.0 h158f68b_31
    - gfortran_osx-64 12.2.0 h18f7dce_1
    - glpk 5.0 h3cb5acd_0
    - gmp 6.2.1 h2e338ed_0
    - graphite2 1.3.13 h2e338ed_1001
    - gsl 2.7 h93259b0_0
    - harfbuzz 7.3.0 h413ba03_0
    - icu 72.1 h7336db1_0
    - isl 0.25 hb486fe8_0
    - krb5 1.20.1 h049b76e_0
    - ld64_osx-64 609 hbfe4790_13
    - lerc 4.0.0 hb486fe8_0
    - libblas 3.9.0 16_osx64_openblas
    - libcblas 3.9.0 16_osx64_openblas
    - libclang-cpp16 16.0.4 default_h762fdd7_0
    - libcurl 8.1.1 hbee3ae8_0
    - libcxx 16.0.4 hd57cbcb_0
    - libdeflate 1.18 hac1461d_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 haf1e3a3_1
    - libexpat 2.5.0 hf0c8a7f_1
    - libffi 3.4.2 h0d85af4_5
    - libgfortran 5.0.0 11_3_0_h97931a8_31
    - libgfortran-devel_osx-64 12.2.0 hf0fd499_31
    - libgfortran5 12.2.0 he409387_31
    - libglib 2.76.3 hc62aa5d_0
    - libiconv 1.17 hac89ed1_0
    - libjpeg-turbo 2.1.5.1 hb7f2c08_0
    - liblapack 3.9.0 16_osx64_openblas
    - libllvm16 16.0.4 he4b1e75_0
    - libnghttp2 1.52.0 he2ab024_0
    - libopenblas 0.3.21 openmp_h429af6e_3
    - libpng 1.6.39 ha978bb4_0
    - libssh2 1.10.0 h47af595_3
    - libtiff 4.5.0 hedf67fa_6
    - libv8 8.9.83 hb1e5e1c_3
    - libwebp-base 1.3.0 hb7f2c08_0
    - libxml2 2.11.4 hd95e348_0
    - libzlib 1.2.13 hfd90126_4
    - llvm-openmp 16.0.4 hff08bdf_0
    - llvm-tools 16.0.4 he4b1e75_0
    - make 4.3 h22f3db7_1
    - mpc 1.3.1 h81bd1dd_0
    - mpfr 4.2.0 h4f9bd69_0
    - ncurses 6.3 h96cf925_1
    - openssl 3.1.0 h8a1eda9_3
    - pango 1.50.14 hbce5e75_1
    - pcre2 10.40 h1c4e4bc_0
    - pixman 0.40.0 hbcb3906_0
    - r-abind 1.4_5 r42hc72bb7e_1004
    - r-base 4.2.3 h4373c2c_3
    - r-bdsmatrix 1.3_6 r42h815d134_1
    - r-bh 1.81.0_1 r42hc72bb7e_0
    - r-boot 1.3_28.1 r42hc72bb7e_0
    - r-clue 0.3_64 r42h815d134_0
    - r-cluster 2.1.4 r42h1e4e481_0
    - r-colorspace 2.1_0 r42h815d134_0
    - r-corpcor 1.6.10 r42hc72bb7e_1
    - r-cpp11 0.4.3 r42hc72bb7e_0
    - r-curl 4.3.3 r42h0100ac3_2
    - r-dagitty 0.3_1 r42hc72bb7e_1
    - r-deoptimr 1.0_13 r42hc72bb7e_0
    - r-fastica 1.2_3 r42hce01bf1_1
    - r-ggm 2.3 r42hc72bb7e_1003
    - r-igraph 1.4.3 r42h85e0d24_0
    - r-jsonlite 1.8.4 r42h815d134_0
    - r-lattice 0.21_8 r42h815d134_0
    - r-lmtest 0.9_40 r42h1e4e481_1
    - r-magrittr 2.0.3 r42h815d134_1
    - r-mass 7.3_60 r42h6dc245f_0
    - r-matrix 1.5_4.1 r42hc46c21c_0
    - r-pkgconfig 2.0.3 r42hc72bb7e_2
    - r-rcpp 1.0.10 r42h49197e3_0
    - r-rcpparmadillo 0.12.4.0.0 r42he9b8800_0
    - r-rlang 1.1.1 r42hac7d2d5_0
    - r-robustbase 0.95_1 r42h63324e3_0
    - r-sfsmisc 1.1_15 r42hc72bb7e_0
    - r-v8 4.3.0 r42h4f115e6_1
    - r-vcd 1.4_11 r42hc72bb7e_0
    - r-zoo 1.8_12 r42h815d134_0
    - readline 8.2 h9e318b2_1
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - tk 8.6.12 h5dbffcc_0
    - tktable 2.10 h49f0cf7_3
    - xz 5.2.6 h775f41a_0
    - zlib 1.2.13 hfd90126_4
    - zstd 1.5.2 hbc0c0cd_6
  run:
    - bioconductor-graph
    - bioconductor-rbgl
    - libcxx >=15.0.7
    - r-abind
    - r-base >=4.2,<4.3.0a0
    - r-bdsmatrix
    - r-bh
    - r-clue
    - r-corpcor
    - r-dagitty
    - r-fastica
    - r-ggm
    - r-igraph
    - r-rcpp
    - r-rcpparmadillo
    - r-robustbase
    - r-sfsmisc >=1.0_26
    - r-vcd
test:
  commands:
    - $R -e "library('pcalg')"
about:
  home: http://pcalg.r-forge.r-project.org/
  license: GPL-2
  license_family: GPL2
  license_file:
    - /opt/mambaforge/envs/bioconda/conda-bld/r-pcalg_1685369111674/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/R/share/licenses/GPL-2
  summary: Functions for causal structure learning and causal inference using graphical
    models. The main algorithms for causal structure learning are PC (for observational
    data without hidden variables), FCI and RFCI (for observational data with hidden
    variables), and GIES (for a mix of data from observational studies (i.e. observational
    data) and data from experiments involving interventions (i.e. interventional data)
    without hidden variables). For causal inference the IDA algorithm, the Generalized
    Backdoor Criterion (GBC), the Generalized Adjustment Criterion (GAC) and some
    related functions are implemented. Functions for incorporating background knowledge
    are provided.
extra:
  copy_test_source_files: true
  final: true
