                        For finding maximum likelihood solution for the
                        antisense model.
FindNATs                A function to find predicted cis-NAT pairs
                        given a genome annotation file.
NASTISeq-package        NASTIseq, an R package for the identification
                        of natural antisense transcripts.
NASTIpredict            A wrapper function for generating prediction
                        scores of the training data.
WholeRoot               Whole root read count data and annotation for
                        Arabidopsis.
defineFDR               Define FDR threshold using training data
getnegativepairs        Extract negative training gene pairs from known
                        gene annotation.
llanti_full             Log likelihood function for the antisense model
llsense_full            Log likelihood function for the sense model
