# This file created by conda-build 2.1.16
# meta.yaml template originally from:
# /Users/travis/build/bioconda/bioconda-recipes/recipes/r-nastiseq, last modified Sat Sep 23 14:19:24 2017
# ------------------------------------------------

package:
    name: r-nastiseq
    version: '1.0'
source:
    fn: NASTIseq_1.0.tar.gz
    md5: e5dd75117e910dec6f6c22b48f570730
    url: https://ohlerlab.mdc-berlin.de/files/duke/NASTIseq/NASTIseq_1.0.tar.gz
build:
    noarch: ''
    noarch_python: false
    rpaths:
        - lib/R/lib/
        - lib/
    string: r3.4.1_0
requirements:
    build:
        - r-rsqlite 1.1_2 r3.4.1_0
        - ca-certificates 2017.7.27.1 0
        - pango 1.40.4 0
        - gsl 2.1 2
        - r-memoise 1.1.0 r3.4.1_0
        - glib 2.51.4 0
        - cairo 1.14.6 4
        - libpng 1.6.28 1
        - r-locfit 1.5_9.1 r3.4.1_0
        - r-rocr 1.0_7 r3.4.1_0
        - pixman 0.34.0 0
        - bioconductor-s4vectors 0.12.2 r3.4.1_0
        - r-xml 3.98_1.6 r3.4.1_0
        - jpeg 9b 0
        - r-gdata 2.17.0 r3.4.1_0
        - r-plogr 0.1_1 r3.4.1_0
        - bioconductor-annotationdbi 1.38.0 r3.4.1_0
        - r-digest 0.6.12 r3.4.1_0
        - freetype 2.7 1
        - r-catools 1.17.1 r3.4.1_0
        - libiconv 1.14 4
        - bioconductor-geneplotter 1.50.0 r3.4.1_0
        - krb5 1.14.2 0
        - libssh2 1.8.0 1
        - r-bitops 1.0_6 r3.4.1_0
        - bioconductor-deseq 1.24.0 r3.4.1_0
        - bioconductor-iranges 2.8.2 r3.4.1_0
        - libtiff 4.0.6 7
        - r-mass 7.3_45 r3.4.1_0
        - xz 5.2.3 0
        - r-bh 1.62.0_1 r3.4.1_0
        - zlib 1.2.8 3
        - fontconfig 2.12.1 4
        - tk 8.5.19 2
        - bioconductor-biobase 2.34.0 r3.4.1_0
        - libxml2 2.9.5 0
        - ncurses 5.9 10
        - r-xtable 1.8_2 r3.4.1_0
        - readline 6.2 0
        - r-dbi 0.6_1 r3.4.1_0
        - r-matrix 1.2_7.1 r3.4.1_0
        - libgcc 4.8.5 1
        - r-rcolorbrewer 1.1_2 r3.4.1_0
        - graphite2 1.3.9 0
        - bioconductor-genefilter 1.58.1 r3.4.1_0
        - r-gtools 3.5.0 r3.4.1_0
        - curl 7.54.1 0
        - r-survival 2.40_1 r3.4.1_0
        - harfbuzz 1.4.3 0
        - bioconductor-biocgenerics 0.22.0 r3.4.1_0
        - pcre 8.39 0
        - r-rcpp 0.12.10 r3.4.1_0
        - openssl 1.0.2l 0
        - gettext 0.19.8.1 0
        - icu 58.1 1
        - libffi 3.2.1 1
        - bioconductor-annotate 1.50.0 r3.4.1_1
        - r-gplots 3.0.1 r3.4.1_0
        - r-kernsmooth 2.23_15 r3.4.1_0
        - r-base 3.4.1 0
        - r-lattice 0.20_34 r3.4.1_0
    run:
        - r-base
        - r-rocr
        - bioconductor-deseq
test:
    commands:
        - $R -e "library('NASTIseq')"
about:
    home: https://ohlerlab.mdc-berlin.de/software/NASTIseq_104/
    license: GPL-2.0
    summary: Pairs of RNA molecules transcribed from partially or entirely complementary
        loci are called cis-natural antisense transcripts (cis-NATs), and they play
        key roles in the regulation of gene expression in many organisms. A promising
        experimental tool for profiling sense and antisense transcription is strand-specific
        RNA sequencing (ssRNA-seq). To identify cis-NATs using ssRNA-seq, we developed
        a new computational method based on model comparison that incorporates the
        inherent variable efficiency of generating perfectly strand-specific libraries.
        Applying the method to new ssRNA-seq data from whole root and cell-type specific
        Arabidopsis libraries confirmed most of the known cis-NAT pairs and identified
        hundreds of additional cis-NAT pairs.
extra:
    final: true
