useDynLib(msm)

export(
absorbing.msm,
boot.msm,
coef.msm,
contour.msm,
crudeinits.msm,
deltamethod,
draic.msm,
drlcv.msm,
efpt.msm,
ematrix.msm,
envisits.msm,
hazard.msm,
image.msm,
MatrixExp,
msm,
msm2Surv,
msm.form.qoutput,
msm.form.eoutput,
logLik.msm,
lrtest.msm,
odds.msm,
pearson.msm,
persp.msm,
phasemeans.msm,    
plot.msm,
plotprog.msm,
pmatrix.msm,
pmatrix.piecewise.msm,
pnext.msm,
ppass.msm,
plot.prevalence.msm,
plot.survfit.msm,
prevalence.msm,
printold.msm,
printnew.msm,
qmatrix.msm,
qratio.msm,
recreate.olddata,
scoreresid.msm,
sim.msm,
simmulti.msm,
simfitted.msm,
sojourn.msm,
statetable.msm,
summary.msm,
surface.msm,
totlos.msm,
transient.msm,
updatepars.msm,
viterbi.msm,
hmmCat,
hmmIdent,
hmmUnif,
hmmNorm,
hmmLNorm,
hmmExp,
hmmGamma,
hmmWeibull,
hmmPois,
hmmBinom,
hmmTNorm,
hmmMETNorm,
hmmMEUnif,
hmmNBinom,
hmmBeta,
hmmT,
hmmMV,    
dtnorm,
ptnorm,
qtnorm,
rtnorm,
dmenorm,
pmenorm,
qmenorm,
rmenorm,
dmeunif,
pmeunif,
qmeunif,
rmeunif,
dpexp,
ppexp,
qpexp,
rpexp,
qgeneric,
d2phase,
p2phase,
q2phase,
r2phase,
h2phase   
)

importFrom(graphics, plot)
importFrom(graphics, persp)
importFrom(graphics, contour)
importFrom(graphics, image)
importFrom(stats, coef)
importFrom(mvtnorm, rmvnorm)
importFrom(survival, Surv)
importFrom(survival, survfit)
importFrom(expm, expm)

S3method(print, msm)
S3method(summary, msm)
S3method(plot, msm)
S3method(contour, msm)
S3method(persp, msm)
S3method(image, msm)
S3method(coef, msm)
S3method(logLik, msm)
S3method(model.frame, msm)
S3method(model.matrix, msm)
S3method(print, hmodel)
S3method(print, hmmdist)
S3method(print, msm.est)
S3method("[", msm.est)
S3method(print, pearson.msm)

S3method(plot, prevalence.msm)
S3method(plot, survfit.msm)

importFrom("grDevices", "rainbow")
importFrom("graphics", "filled.contour", "legend", "lines", "par",
           "text")
importFrom("stats", "as.formula", "deriv", "dexp", "dnorm",
           "integrate", "logLik", "model.extract", "model.frame",
           "model.matrix", "na.fail", "na.omit", "na.pass",
           "numericDeriv", "optimHess", "pchisq", "pexp", "plogis",
           "pnorm", "qlogis", "qnorm", "quantile", "rbeta", "rbinom",
           "reformulate", "rexp", "rgamma", "rlnorm", "rnbinom",
           "rnorm", "rpois", "rt", "runif", "rweibull", "sd",
"setNames", "terms", "uniroot")

