# Tools for extracting individual genomes from metagenomes

## Documentation for package ‘mmgenome’ version 0.7.1

- DESCRIPTION file.

## Help Pages

mmgenome-package | mmgenome: multi-metagenome
mmadd | Add data to any mmgenome object
mmexport | Exports scaffolds in fasta format
mmextract | Extracts a subset of scaffolds
mmextract_network | Extract scaffolds connected by paired-end reads
mmformat_esom | Format raw esom data for use in mmgenome
mmformat_ppsp | Format ppsp data for use in mmgenome
mmgenome | mmgenome: multi-metagenome
mmimport | Import data
mmload | Data loading function
mmplot | Function to visualise metagenomes
mmplot_locator | Interactively define a selection subspace on mmplot or mmplot_network
mmplot_network | Plots connected scaffolds in a network
mmplot_pairs | Generates a ggplot2 style pairs plot
mmplot_selection | Highlight subsets
mmref | Compare essential genes in a bin to a group of references
mmstats | Calculates summary statistics on a set of scaffolds
mmsubset | Subset scaffolds