micropan-package	micropan
barrnap	barrnap
bClust	bClust
bDist	bDist
binomixEstimate	binomixEstimate
blastAllAll	blastAllAll
chao	chao
dClust	dClust
distJaccard	distJaccard
distManhattan	distManhattan
entrezDownload	entrezDownload
findOrfs	findOrfs
fluidity	fluidity
geneWeights	geneWeights
getAccessions	getAccessions
gff2fasta	gff2fasta
gffSignature	gffSignature
heaps	heaps
hmmerCleanOverlap	hmmerCleanOverlap
hmmerScan	hmmerScan
isOrtholog	isOrtholog
lorfs	lorfs
micropan	micropan
Mpneumoniae	mpneumoniae
mpneumoniae	mpneumoniae
Mpneumoniae.blast.clustering	mpneumoniae
Mpneumoniae.blast.distances	mpneumoniae
Mpneumoniae.blast.panmat	mpneumoniae
Mpneumoniae.domain.clustering	mpneumoniae
Mpneumoniae.domain.panmat	mpneumoniae
Mpneumoniae.table	mpneumoniae
orfLength	orfLength
panMatrix	panMatrix
panpca	panpca
panPrep	panPrep
panTree	panTree
plot.Binomix	generic.Binomix
plot.Panmat	generic.Panmat
plot.Panpca	generic.Panpca
plot.Pantree	generic.Pantree
plot.Rarefac	generic.Rarefac
plotLoadings	scores.loadings
plotScores	scores.loadings
prodigal	prodigal
rarefaction	rarefaction
readBlastTable	readBlastTable
readGFF	readGFF
readHmmer	readHmmer
summary.Binomix	generic.Binomix
summary.Panmat	generic.Panmat
summary.Panpca	generic.Panpca
summary.Pantree	generic.Pantree
summary.Rarefac	generic.Rarefac
writeGFF	readGFF
xzcompress	xz
xzuncompress	xz
