# Generated by roxygen2: do not edit by hand

S3method(all_names,Taxmap)
S3method(all_names,Taxonomy)
S3method(all_names,default)
S3method(arrange_obs,Taxmap)
S3method(arrange_obs,default)
S3method(arrange_taxa,Taxonomy)
S3method(arrange_taxa,default)
S3method(branches,Taxonomy)
S3method(branches,default)
S3method(classifications,Taxonomy)
S3method(classifications,default)
S3method(filter_obs,Taxmap)
S3method(filter_obs,default)
S3method(filter_taxa,Taxmap)
S3method(filter_taxa,Taxonomy)
S3method(filter_taxa,default)
S3method(get_data,Taxonomy)
S3method(get_data,default)
S3method(get_data_frame,Taxonomy)
S3method(get_data_frame,default)
S3method(get_dataset,Taxmap)
S3method(get_dataset,default)
S3method(heat_tree,Taxmap)
S3method(id_classifications,Taxonomy)
S3method(id_classifications,default)
S3method(internodes,Taxonomy)
S3method(internodes,default)
S3method(is_branch,Taxonomy)
S3method(is_branch,default)
S3method(is_internode,Taxonomy)
S3method(is_internode,default)
S3method(is_leaf,Taxonomy)
S3method(is_leaf,default)
S3method(is_root,Taxonomy)
S3method(is_root,default)
S3method(is_stem,Taxonomy)
S3method(is_stem,default)
S3method(leaves,Taxonomy)
S3method(leaves,default)
S3method(leaves_apply,Taxonomy)
S3method(leaves_apply,default)
S3method(map_data,Taxonomy)
S3method(map_data,default)
S3method(map_data_,Taxonomy)
S3method(map_data_,default)
S3method(mutate_obs,Taxmap)
S3method(mutate_obs,default)
S3method(n_leaves,Taxonomy)
S3method(n_leaves,default)
S3method(n_leaves_1,Taxonomy)
S3method(n_leaves_1,default)
S3method(n_obs,Taxmap)
S3method(n_obs,default)
S3method(n_obs_1,Taxmap)
S3method(n_obs_1,default)
S3method(n_subtaxa,Taxonomy)
S3method(n_subtaxa,default)
S3method(n_subtaxa_1,Taxonomy)
S3method(n_subtaxa_1,default)
S3method(n_supertaxa,Taxonomy)
S3method(n_supertaxa,default)
S3method(n_supertaxa_1,Taxonomy)
S3method(n_supertaxa_1,default)
S3method(obs,Taxmap)
S3method(obs,default)
S3method(obs_apply,Taxmap)
S3method(obs_apply,default)
S3method(print,hierarchies)
S3method(print,taxa)
S3method(print_tree,Taxonomy)
S3method(print_tree,default)
S3method(remove_redundant_names,Taxonomy)
S3method(remove_redundant_names,default)
S3method(replace_taxon_ids,Taxonomy)
S3method(replace_taxon_ids,default)
S3method(roots,Taxonomy)
S3method(roots,default)
S3method(sample_frac_obs,Taxmap)
S3method(sample_frac_obs,default)
S3method(sample_frac_taxa,Taxmap)
S3method(sample_frac_taxa,Taxonomy)
S3method(sample_frac_taxa,default)
S3method(sample_n_obs,Taxmap)
S3method(sample_n_obs,default)
S3method(sample_n_taxa,Taxmap)
S3method(sample_n_taxa,Taxonomy)
S3method(sample_n_taxa,default)
S3method(select_obs,Taxmap)
S3method(select_obs,default)
S3method(stems,Taxonomy)
S3method(stems,default)
S3method(subtaxa,Taxonomy)
S3method(subtaxa,default)
S3method(subtaxa_apply,Taxonomy)
S3method(subtaxa_apply,default)
S3method(supertaxa,Taxonomy)
S3method(supertaxa,default)
S3method(supertaxa_apply,Taxonomy)
S3method(supertaxa_apply,default)
S3method(taxon_ids,Taxonomy)
S3method(taxon_ids,default)
S3method(taxon_indexes,Taxonomy)
S3method(taxon_indexes,default)
S3method(taxon_names,Taxonomy)
S3method(taxon_names,default)
S3method(taxon_ranks,Taxonomy)
S3method(taxon_ranks,default)
S3method(taxonomy_table,Taxonomy)
S3method(taxonomy_table,default)
S3method(transmute_obs,Taxmap)
S3method(transmute_obs,default)
export("%>%")
export(all_names)
export(ambiguous_synonyms)
export(arrange_obs)
export(arrange_taxa)
export(as_phyloseq)
export(branches)
export(calc_diff_abund_deseq2)
export(calc_group_mean)
export(calc_group_median)
export(calc_group_rsd)
export(calc_group_stat)
export(calc_n_samples)
export(calc_obs_props)
export(calc_prop_samples)
export(calc_taxon_abund)
export(classifications)
export(compare_groups)
export(complement)
export(contains)
export(counts_to_presence)
export(database_list)
export(diverging_palette)
export(ends_with)
export(everything)
export(extract_tax_data)
export(filter_ambiguous_taxa)
export(filter_obs)
export(filter_taxa)
export(get_data)
export(get_data_frame)
export(get_dataset)
export(heat_tree)
export(heat_tree_matrix)
export(hierarchies)
export(hierarchy)
export(id_classifications)
export(ids)
export(internodes)
export(is_ambiguous)
export(is_branch)
export(is_internode)
export(is_leaf)
export(is_root)
export(is_stem)
export(layout_functions)
export(leaves)
export(leaves_apply)
export(lookup_tax_data)
export(make_dada2_asv_table)
export(make_dada2_tax_table)
export(map_data)
export(map_data_)
export(matches)
export(mutate_obs)
export(n_leaves)
export(n_leaves_1)
export(n_obs)
export(n_obs_1)
export(n_subtaxa)
export(n_subtaxa_1)
export(n_supertaxa)
export(n_supertaxa_1)
export(ncbi_taxon_sample)
export(nms)
export(num_range)
export(obs)
export(obs_apply)
export(one_of)
export(parse_dada2)
export(parse_edge_list)
export(parse_greengenes)
export(parse_mothur_tax_summary)
export(parse_mothur_taxonomy)
export(parse_newick)
export(parse_phylo)
export(parse_phyloseq)
export(parse_primersearch)
export(parse_qiime_biom)
export(parse_rdp)
export(parse_silva_fasta)
export(parse_tax_data)
export(parse_ubiome)
export(parse_unite_general)
export(primersearch)
export(primersearch_raw)
export(print_tree)
export(qualitative_palette)
export(quantative_palette)
export(ranks)
export(rarefy_obs)
export(read_fasta)
export(remove_redundant_names)
export(replace_taxon_ids)
export(rev_comp)
export(reverse)
export(roots)
export(sample_frac_obs)
export(sample_frac_taxa)
export(sample_n_obs)
export(sample_n_taxa)
export(select_obs)
export(starts_with)
export(stems)
export(subtaxa)
export(subtaxa_apply)
export(supertaxa)
export(supertaxa_apply)
export(taxa)
export(taxmap)
export(taxon)
export(taxon_database)
export(taxon_id)
export(taxon_ids)
export(taxon_indexes)
export(taxon_name)
export(taxon_names)
export(taxon_rank)
export(taxon_ranks)
export(taxonomy)
export(taxonomy_table)
export(transmute_obs)
export(write_greengenes)
export(write_mothur_taxonomy)
export(write_rdp)
export(write_silva_fasta)
export(write_unite_general)
export(zero_low_counts)
importFrom(Rcpp,sourceCpp)
importFrom(dplyr,contains)
importFrom(dplyr,ends_with)
importFrom(dplyr,everything)
importFrom(dplyr,matches)
importFrom(dplyr,num_range)
importFrom(dplyr,one_of)
importFrom(dplyr,starts_with)
importFrom(magrittr,"%>%")
importFrom(rlang,.data)
useDynLib(metacoder)
