.mat	dot-mat
.rescale01	dot-rescale01
._legendfun2	dot-_legendfun2
analyse_long_range_links	analyse_long_range_links
cleanup	cleanup
cleanup_support	cleanup_support
create_network	create_network
create_network_for_gene	create_network_for_gene
create_tanglegram	create_tanglegram
estimate_Hamming_distance_weights	estimate_Hamming_distance_weights
estimate_variation_in_CDS	estimate_variation_in_CDS
GBAccession	GBAccession
GBAccession-class	GBAccession
GBFile-class	gbkfile
GBKFile-class	gbkfile
GenBankFile-class	gbkfile
GenBankRecord-class	GenBank-classes
generate_Links_SNPS_fasta	generate_Links_SNPS_fasta
genomewide_LDMap	genomewide_LDMap
LDWeaver	LDWeaver
make_gwes_plots	make_gwes_plots
parse_fasta_alignment	parse_fasta_alignment
parse_fasta_SNP_alignment	parse_fasta_SNP_alignment
parse_genbank_file	parse_genbank_file
parse_gff_file	parse_gff_file
perform_MI_computation	perform_MI_computation
perform_snpEff_annotations	perform_snpEff_annotations
read_AnnotatedLinks	read_AnnotatedLinks
read_GFF3_Annotation	read_GFF3_Annotation
read_LongRangeLinks	read_LongRangeLinks
read_ReferenceFasta	read_ReferenceFasta
read_ShortRangeLinks	read_ShortRangeLinks
read_TopHits	read_TopHits
runARACNE	runARACNE
snpdat_to_fa	snpdat_to_fa
view_tree	view_tree
write_output_for_gwes_explorer	write_output_for_gwes_explorer
