Package: LDWeaver
Type: Package
Title: Genomewide Epistasis Analysis on Bacteria
Version: 1.5.1
Authors@R: person("Sudaraka", "Mallawaarachchi", email = "smallawaarachchi@gmail.com", role = c("aut", "cre"))
Maintainer: Sudaraka Mallawaarachchi <smallawaarachchi@gmail.com>
Description: Perform genomewide epistasis analysis by evaluating the LD structure in bacteria.
License: GPL (>=3) + file LICENSE
Encoding: UTF-8
LazyData: true
biocViews: Software
Depends: R (>= 4.0.0),
Imports: ape, Biostrings, chromoMap, data.table, dplyr, fitdistrplus,
        GenomicRanges, GenomeInfoDb, ggplot2, ggraph, grDevices,
        heatmap3, htmlwidgets, igraph, IRanges, Matrix, MatrixExtra,
        methods, parallel, plyr, RColorBrewer, Rcpp, RcppArmadillo,
        S4Vectors, stats, utils, VariantAnnotation
Suggests: phytools, ggtree, ggnewscale, spam, spam64, testthat (>=
        3.0.0)
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 7.3.2
URL: https://github.com/Sudaraka88/LDWeaver
BugReports: https://github.com/Sudaraka88/LDWeaver/issues
Biarch: TRUE
Config/testthat/edition: 3
Author: Sudaraka Mallawaarachchi [aut, cre]
Built: R 4.3.3; x86_64-apple-darwin13.4.0; 2024-07-19 02:33:08 UTC; unix
