Zinba-class             Class 'Distribution'
callRegions             call regions from a posterior matrix
dzinba                  Zero inflated negative binomial distribution
dzinba.copula           Density, CDF and random number generation from
                        a bivariate zinba copula
em                      Expectation maximization algorithm
fit.zinba.copula        Maximum likelihood fit of the zinba copula
                        distribution
fitzinba                Fit parameters of a zero inflated negative
                        binomial distribution
histoneHMM-package      Analysis of histone modification data using a
                        HMM
hmm.posterior           HMM posterior
hmm.viterbi             Viterbi algorithm
run.bivariate.hmm       Bivariate HMM analysis
run.univariate.hmm      Univariate HMM analysis
zinba.hmm.posterior     Compute state posterior probabilities for a HMM
                        with zinba emission distributions.
zinbacopula.hmm.posterior
                        State posterior probabilities for a HMM with
                        zinba copula emission probabilities
