GenABEL-package	GenABEL
add.phdata	add.phdata
add.plot	add.plot
annotation	snp.data-class
annotation,gwaa.data-method	snp.data-class
annotation,scan.gwaa-method	scan.gwaa-class
annotation,snp.data-method	snp.data-class
arrange_probabel_phe	arrange_probabel_phe
as.character.gwaa.data	as.character.gwaa.data
as.character.snp.coding	as.character.snp.coding
as.character.snp.data	as.character.snp.data
as.character.snp.strand	as.character.snp.strand
as.data.frame.gwaa.data	as.data.frame.gwaa.data
as.double.gwaa.data	as.double.gwaa.data
as.double.snp.data	as.double.snp.data
as.genotype	as.genotype
as.genotype.gwaa.data	as.genotype.gwaa.data
as.genotype.snp.data	as.genotype.snp.data
as.hsgeno	as.hsgeno
as.hsgeno.gwaa.data	as.hsgeno.gwaa.data
as.hsgeno.snp.data	as.hsgeno.snp.data
autosomal	autosomal
blurGenotype	blurGenotype
catable	catable
ccfast	ccfast
check.marker	check.marker
check.marker-class	check.marker-class
check.trait	check.trait
checkPackageVersionOnCRAN	checkPackageVersionOnCRAN
chi2_CG	cocohet
chromosome	snp.data-class
chromosome,gwaa.data-method	snp.data-class
chromosome,scan.gwaa-method	scan.gwaa-class
chromosome,snp.data-method	snp.data-class
cocohet	cocohet
coding	snp.data-class
coding,gwaa.data-method	snp.data-class
coding,scan.gwaa-method	scan.gwaa-class
coding,snp.data-method	snp.data-class
coding<-	snp.data-class
coding<-,gwaa.data-method	snp.data-class
coding<-,snp.data-method	snp.data-class
coerce,snp.coding,character-method	snp.coding-class
coerce,snp.data,character-method	snp.data-class
coerce,snp.data,genotype-method	snp.data-class
coerce,snp.data,hsgeno-method	snp.data-class
coerce,snp.data,numeric-method	snp.data-class
coerce,snp.mx,character-method	snp.mx-class
coerce,snp.mx,numeric-method	snp.mx-class
coerce,snp.strand,character-method	snp.strand-class
convert.snp.affymetrix	convert.snp.affymetrix
convert.snp.illumina	convert.snp.illumina
convert.snp.mach	convert.snp.mach
convert.snp.ped	convert.snp.ped
convert.snp.text	convert.snp.text
convert.snp.tped	convert.snp.tped
crnames	crnames
del.phdata	del.phdata
descriptives.marker	descriptives.marker
descriptives.scan	descriptives.scan
descriptives.trait	descriptives.trait
dim,scan.gwaa-method	scan.gwaa-class
dim,snp.data-method	snp.data-class
dimnames,scan.gwaa-method	scan.gwaa-class
dimnames,snp.data-method	snp.data-class
dprfast	dprfast
effallele	snp.data-class
effallele,gwaa.data-method	snp.data-class
effallele,scan.gwaa-method	scan.gwaa-class
effallele,snp.data-method	snp.data-class
egscore	egscore
egscore.old	egscore.old
emp.ccfast	emp.ccfast
emp.qtscore	emp.qtscore
estlambda	estlambda
export.impute	export.impute
export.merlin	export.merlin
export.plink	export.plink
extract.annotation.impute	extract.annotation.impute
extract.annotation.mach	extract.annotation.mach
findRelatives	findRelatives
formetascore	formetascore
GASurv	GASurv
GenABEL	GenABEL
genabel	GenABEL
generateOffspring	generateOffspring
getcall	scan.gwaa-class
getcall,scan.gwaa-method	scan.gwaa-class
getfamily	scan.gwaa-class
getfamily,scan.gwaa-method	scan.gwaa-class
getLogLikelihoodGivenRelation	getLogLikelihoodGivenRelation
grammar	grammar
gtdata	gwaa.data-class
gtdata,gwaa.data-method	gwaa.data-class
gwaa.data-class	gwaa.data-class
hom	hom
hom.old	hom.old
HWE.show	HWE.show
ibs	ibs
ibs.old	ibs.old
idnames	snp.data-class
idnames,gwaa.data-method	snp.data-class
idnames,scan.gwaa-method	scan.gwaa-class
idnames,snp.data-method	snp.data-class
impute2databel	impute2databel
impute2mach	impute2mach
lambda	scan.gwaa-class
lambda,scan.gwaa-method	scan.gwaa-class
load.gwaa.data	load.gwaa.data
mach2databel	mach2databel
makeTransitionMatrix	makeTransitionMatrix
male	snp.data-class
male,gwaa.data-method	snp.data-class
male,scan.gwaa-method	scan.gwaa-class
male,snp.data-method	snp.data-class
map	snp.data-class
map,gwaa.data-method	snp.data-class
map,scan.gwaa-method	scan.gwaa-class
map,snp.data-method	snp.data-class
merge.gwaa.data	merge.gwaa.data
merge.snp.data	merge.snp.data
mlreg	mlreg
mlreg.p	mlreg.p
mmscore	mmscore
nids	snp.data-class
nids,gwaa.data-method	snp.data-class
nids,scan.gwaa-method	scan.gwaa-class
nids,snp.data-method	snp.data-class
npsubtreated	npsubtreated
nsnps	snp.data-class
nsnps,gwaa.data-method	snp.data-class
nsnps,scan.gwaa-method	scan.gwaa-class
nsnps,snp.data-method	snp.data-class
patch_strand	patch_strand
perid.summary	perid.summary
PGC	PGC
phdata	gwaa.data-class
phdata,gwaa.data-method	gwaa.data-class
phdata<-	gwaa.data-class
phdata<-,gwaa.data-method	gwaa.data-class
plot, check.marker-method	check.marker-class
plot, scan.gwaa.2D-method	scan.gwaa.2D-class
plot,scan.gwaa-method	scan.gwaa-class
plot.check.marker	plot.check.marker
plot.scan.gwaa	plot.scan.gwaa
plot.scan.gwaa.2D	plot.scan.gwaa.2D
polygenic	polygenic
polygenic_hglm	polygenic_hglm
qtscore	qtscore
qvaluebh95	qvaluebh95
r2fast	r2fast
r2fast.old	r2fast.old
recodeChromosome	recodeChromosome
reconstructNPs	reconstructNPs
redundant	redundant
refallele	snp.data-class
refallele,gwaa.data-method	snp.data-class
refallele,scan.gwaa-method	scan.gwaa-class
refallele,snp.data-method	snp.data-class
refresh.gwaa.data	refresh.gwaa.data
reg.gwaa	mlreg
results	scan.gwaa-class
results,scan.gwaa-method	scan.gwaa-class
rhofast	rhofast
rntransform	rntransform
save.gwaa.data	save.gwaa.data
scan.glm	scan.glm
scan.glm.2D	scan.glm.2D
scan.gwaa-class	scan.gwaa-class
scan.gwaa.2D-class	scan.gwaa.2D-class
scan.haplo	scan.haplo
scan.haplo.2D	scan.haplo.2D
show,gwaa.data-method	gwaa.data-class
show,scan.gwaa-method	scan.gwaa-class
show,snp.coding-method	snp.coding-class
show,snp.data-method	snp.data-class
show,snp.mx-method	snp.mx-class
show,snp.strand-method	snp.strand-class
show.ncbi	show.ncbi
snp.coding-class	snp.coding-class
snp.data	snp.data
snp.data-class	snp.data-class
snp.mx-class	snp.mx-class
snp.names	snp.names
snp.strand-class	snp.strand-class
snp.subset	snp.subset
snpnames	snp.data-class
snpnames,gwaa.data-method	snp.data-class
snpnames,scan.gwaa-method	scan.gwaa-class
snpnames,snp.data-method	snp.data-class
snps.cell-class	snps.cell-class
sortmap.internal	sortmap.internal
sset	sset
strand	snp.data-class
strand,gwaa.data-method	snp.data-class
strand,scan.gwaa-method	scan.gwaa-class
strand,snp.data-method	snp.data-class
strand<-	snp.data-class
strand<-,gwaa.data-method	snp.data-class
strand<-,snp.data-method	snp.data-class
summary, check.marker-method	check.marker-class
summary,gwaa.data-method	gwaa.data-class
summary,snp.data-method	snp.data-class
summary,snp.mx-method	snp.mx-class
summary.check.marker	summary.check.marker
summary.gwaa.data	summary.gwaa.data
summary.scan.gwaa	summary.scan.gwaa
summary.snp.data	summary.snp.data
summary.snp.data_old	summary.snp.data
VIFGC	VIFGC
VIFGC_ovdom	VIFGC_ovdom
Xfix	Xfix
ztransform	ztransform
[,gwaa.data,ANY,ANY,ANY-method	gwaa.data-class
[,scan.gwaa,ANY,ANY,ANY-method	scan.gwaa-class
[,snp.coding,ANY,missing,missing-method	snp.coding-class
[,snp.data,ANY,ANY,ANY-method	snp.data-class
[,snp.mx,ANY,ANY,ANY-method	snp.mx-class
[,snp.strand,ANY,missing,missing-method	snp.strand-class
