emcncf                  EM estimate of copy number and cellular
                        fraction of segment clusters
emcncf2                 EM estimate of copy number and cellular
                        fraction with clonal and subclonal cluster
                        structure
facets-deprecated       Deprecated functions in package 'facets'
facets-package          Cellular Fraction and Copy Numbers from Tumor
                        Sequencing
fitcncf                 Copy number and cellular fraction of segment
                        clusters
logRlogORspider         Plot segment logR-logOR summary statistics
plotSample              Plot the data and results for a single sample
preProcSample           Pre-process a sample
procSample              Process a sample
readSnpMatrix           Read in the SNP read count matrix file
